Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00803 ATGGGCAAGAAGAAGGGCTGGTTTTATTTAGTCAAGAAGCTATTTGTTTCAGAGACACAGCCAAAGCCTGAAAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGGATGAGGAACAAAAGATTAGCCACACTGACAGCGCCGTCGCCATCAAAATTGATGACGAGACAAGAGGAGGAAGAGGAGGAAGAGGAGAGGAAGCAGGCTCTTTCTGTGGCCATTGCGAGTACTGCAGCAGCAGAGGCGGCAGTTGCGGCAGCTAAGGCTGCTGTTGAAGTTGTTTGGCTCACAGGGACACCTCAATCTCATCAACAAGAGGCTGCAGAAGAAGTCTTTAAGCCTCTCAAGAAGGCCCCTCCATCTGATCGTTTAAGACGTGAAAGGGAAATCCATGAGTTTGCTGCTATTACTATCCAAACTGCTTTCCGTGGCTTCCTTGCGAGAAAAGCATTGAGAGCATTGAAAGGAATAGTGAGGCTACAGGCAATTATTAGGGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCTGTTCAAATAGACTTCATCTTCCTCAAAACACTTTCAATTCTCCTGAAACGAAGCAGTTTCAGAGCTTGAAAGATAAGATTATAAAGTTGGATTCGAACGATCAAAGGTGGGATGATAGCCTATTATCAAAAGAAGAAGCAGATGCAGTGTTTTTGAGCAGGAAAGAAGCAGTGATCAGGAGAGAGCGAGTGAAGGAATACTTATTCGCCCACAGGAGATCTGCAGAATCAGAAAGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTCTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCATTTTCACCTCAAATCCAAAACAAAAAGAGACAACAAACGACAGATTCAAACCAAGCCCAACAACAAAAAACATGGATAGAACAATAGAAGAACACCCCAACCAATCTCCATCTCAAAAACCAGTTCTGAAAAGCCTCTCTCACCACAAGAAGCAACGTTCATTGGGAGGTGGAATAGACTCAAACAACTCATTTTCAAGCTCTCCACTGGTGCCAACATACATGGCTGCCACTGAATCAGCAAAGGCAAAAGCAAGGTCCTTAAGCTCCCCCAAGCTAAGGCCAGCAGGGGGATTGGACACATGCTCTGATGGGAATTCTCCATGCAAGACAAAGCAGCTCTGTTTGAGTGAAGTTGGAATAAGCAGTGGCAGAAGGGGTTTTCATCAGCAGCAAAGATCACCAGGGCTGAAGGGACTTCCAGGGCCAACAAGATCAAGCAGAACTCTCACCAAAGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGATAGACAAAGTGCCTTCCAATGA 1416 45.41 MGKKKGWFYLVKKLFVSETQPKPEKKQKRWKWVFGRMRNKRLATLTAPSPSKLMTRQEEEEEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTPQSHQQEAAEEVFKPLKKAPPSDRLRREREIHEFAAITIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVCSNRLHLPQNTFNSPETKQFQSLKDKIIKLDSNDQRWDDSLLSKEEADAVFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSIFTSNPKQKETTNDRFKPSPTTKNMDRTIEEHPNQSPSQKPVLKSLSHHKKQRSLGGGIDSNNSFSSSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLCLSEVGISSGRRGFHQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQSAFQ 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9226933 9230673 + Lsi09G008030.1 Lsi09g00803 670416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00803 471 PANTHER IQ-DOMAIN 11 5 457 - -
Lsi09g00803 471 MobiDBLite consensus disorder prediction 384 406 - -
Lsi09g00803 471 ProSiteProfiles IQ motif profile. 131 159 IPR000048 GO:0005515
Lsi09g00803 471 PANTHER IQ-DOMAIN 5-RELATED 5 457 - -
Lsi09g00803 471 MobiDBLite consensus disorder prediction 309 329 - -
Lsi09g00803 471 ProSiteProfiles IQ motif profile. 155 182 IPR000048 GO:0005515
Lsi09g00803 471 Gene3D - 131 179 - -
Lsi09g00803 471 Pfam IQ calmodulin-binding motif 134 152 IPR000048 GO:0005515
Lsi09g00803 471 MobiDBLite consensus disorder prediction 45 66 - -
Lsi09g00803 471 MobiDBLite consensus disorder prediction 303 365 - -
Lsi09g00803 471 MobiDBLite consensus disorder prediction 423 471 - -
Lsi09g00803 471 MobiDBLite consensus disorder prediction 443 471 - -
Lsi09g00803 471 Pfam Protein of unknown function (DUF4005) 318 395 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00803 - - - csv:101203390 827.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01547 Lsi-Chr3:26451376 Lsi09g00803 Lsi-Chr9:9226933 3.38E-44 dispersed
Lsi08g01337 Lsi-Chr8:21669803 Lsi09g00803 Lsi-Chr9:9226933 1.42E-13 dispersed
Lsi09g00803 Lsi-Chr9:9226933 Lsi09g01649 Lsi-Chr9:24809506 3.73E-19 dispersed
Lsi09g00803 Lsi-Chr9:9226933 Lsi02g01698 Lsi-Chr2:22749757 6.67E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi06g00645 . 23 430 IQD Protein Family AT3G22190 58.0 7.0e-97 351.3
Lsi04g01418 . 1 438 IQD Protein Family AT2G26180 61.1 3.8e-119 425.2
Lsi01g00265 . 61 334 IQD Protein Family AT2G33990 51.8 1.7e-61 233.0
Lsi07g00304 . 40 215 IQD Protein Family AT2G33990 55.9 2.0e-49 193.0
Lsi01g00265 . 61 282 IQD Protein Family AT3G15050 50.5 1.1e-55 213.8
Lsi07g00304 . 43 216 IQD Protein Family AT3G15050 62.7 5.3e-55 211.5
Lsi09g00803 . 124 471 IQD Protein Family AT5G13460 50.4 1.2e-75 280.8
Lsi06g00223 . 1 391 IQD Protein Family AT3G16490 51.0 2.9e-65 246.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007465 1 2 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00803 Lsi_Chr09 FPKM 8.654471 6.135937 14.333368 13.121499 7.136987 4.785807 6.828101 26.013573 19.027964 20.351873