Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00803 ATGGGCAAGAAGAAGGGCTGGTTTTATTTAGTCAAGAAGCTATTTGTTTCAGAGACACAGCCAAAGCCTGAAAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGGATGAGGAACAAAAGATTAGCCACACTGACAGCGCCGTCGCCATCAAAATTGATGACGAGACAAGAGGAGGAAGAGGAGGAAGAGGAGAGGAAGCAGGCTCTTTCTGTGGCCATTGCGAGTACTGCAGCAGCAGAGGCGGCAGTTGCGGCAGCTAAGGCTGCTGTTGAAGTTGTTTGGCTCACAGGGACACCTCAATCTCATCAACAAGAGGCTGCAGAAGAAGTCTTTAAGCCTCTCAAGAAGGCCCCTCCATCTGATCGTTTAAGACGTGAAAGGGAAATCCATGAGTTTGCTGCTATTACTATCCAAACTGCTTTCCGTGGCTTCCTTGCGAGAAAAGCATTGAGAGCATTGAAAGGAATAGTGAGGCTACAGGCAATTATTAGGGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCTGTTCAAATAGACTTCATCTTCCTCAAAACACTTTCAATTCTCCTGAAACGAAGCAGTTTCAGAGCTTGAAAGATAAGATTATAAAGTTGGATTCGAACGATCAAAGGTGGGATGATAGCCTATTATCAAAAGAAGAAGCAGATGCAGTGTTTTTGAGCAGGAAAGAAGCAGTGATCAGGAGAGAGCGAGTGAAGGAATACTTATTCGCCCACAGGAGATCTGCAGAATCAGAAAGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTCTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCATTTTCACCTCAAATCCAAAACAAAAAGAGACAACAAACGACAGATTCAAACCAAGCCCAACAACAAAAAACATGGATAGAACAATAGAAGAACACCCCAACCAATCTCCATCTCAAAAACCAGTTCTGAAAAGCCTCTCTCACCACAAGAAGCAACGTTCATTGGGAGGTGGAATAGACTCAAACAACTCATTTTCAAGCTCTCCACTGGTGCCAACATACATGGCTGCCACTGAATCAGCAAAGGCAAAAGCAAGGTCCTTAAGCTCCCCCAAGCTAAGGCCAGCAGGGGGATTGGACACATGCTCTGATGGGAATTCTCCATGCAAGACAAAGCAGCTCTGTTTGAGTGAAGTTGGAATAAGCAGTGGCAGAAGGGGTTTTCATCAGCAGCAAAGATCACCAGGGCTGAAGGGACTTCCAGGGCCAACAAGATCAAGCAGAACTCTCACCAAAGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGATAGACAAAGTGCCTTCCAATGA 1416 45.41 MGKKKGWFYLVKKLFVSETQPKPEKKQKRWKWVFGRMRNKRLATLTAPSPSKLMTRQEEEEEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTPQSHQQEAAEEVFKPLKKAPPSDRLRREREIHEFAAITIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVCSNRLHLPQNTFNSPETKQFQSLKDKIIKLDSNDQRWDDSLLSKEEADAVFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSIFTSNPKQKETTNDRFKPSPTTKNMDRTIEEHPNQSPSQKPVLKSLSHHKKQRSLGGGIDSNNSFSSSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLCLSEVGISSGRRGFHQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQSAFQ 471
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 9226933 9230673 + Lsi09G008030.1 Lsi09g00803 670416
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00803 471 PANTHER IQ-DOMAIN 11 5 457 - -
Lsi09g00803 471 MobiDBLite consensus disorder prediction 384 406 - -
Lsi09g00803 471 ProSiteProfiles IQ motif profile. 131 159 IPR000048 GO:0005515
Lsi09g00803 471 PANTHER IQ-DOMAIN 5-RELATED 5 457 - -
Lsi09g00803 471 MobiDBLite consensus disorder prediction 309 329 - -
Lsi09g00803 471 ProSiteProfiles IQ motif profile. 155 182 IPR000048 GO:0005515
Lsi09g00803 471 Gene3D - 131 179 - -
Lsi09g00803 471 Pfam IQ calmodulin-binding motif 134 152 IPR000048 GO:0005515
Lsi09g00803 471 MobiDBLite consensus disorder prediction 45 66 - -
Lsi09g00803 471 MobiDBLite consensus disorder prediction 303 365 - -
Lsi09g00803 471 MobiDBLite consensus disorder prediction 423 471 - -
Lsi09g00803 471 MobiDBLite consensus disorder prediction 443 471 - -
Lsi09g00803 471 Pfam Protein of unknown function (DUF4005) 318 395 IPR025064 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01547 Lsi-Chr3:26451376 Lsi09g00803 Lsi-Chr9:9226933 3.38E-44 dispersed
Lsi08g01337 Lsi-Chr8:21669803 Lsi09g00803 Lsi-Chr9:9226933 1.42E-13 dispersed
Lsi09g00803 Lsi-Chr9:9226933 Lsi09g01649 Lsi-Chr9:24809506 3.73E-19 dispersed
Lsi09g00803 Lsi-Chr9:9226933 Lsi02g01698 Lsi-Chr2:22749757 6.67E-30 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00803 - - csv:101203390 827.78