Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00815 ATGACTGAATCATTAGGTCAGATGGAGAATAATAATGTTATGGCATCTGTGCACGCCACAGTTTTTAAGGAATCAGAGGATCTTGAGGGGAAAAGCAGCAAAATTGAGGGATATGACTTCAATCAAGGACTAAGTTACTCCAACCTTATAAGGTCCATGATCTCCACTGGATTTCAAGCCTCCAATTTGGGAGATGCCATAGAAGTCGTCAATAAAATGTTAGACTGGAGGCTTGCTGATGAGAATTTAACAGAAGATTGCTCTGAGGAGGAGAAGGATCCAATCTTTAGGGAGTCGACGAGGTGCAAAGTGTTTCTTGGTTTCACTTCCAATCTTATTTCTTCGGGCGTTAGAGACACAATTCGTTACCTTGTTGAACACCATATGGTTGATGTGATTGTCACTACAACTGGTGGTATTGAAGAAGATCTTATAAAATGTCTTGCTCCCACATATAAAGGTGACTTTTCTCTTCCTGGAGCAGTTCTTCGATCAAAAGGGTTGAATCGCATTGGTAATTTGTTGGTTCCTAATGCTAACTACTGCAAATTTGAGGATTGGATAATCCCAATTTTGGATCAGATGTTGAAGGAACAACTTGAAGAGAATGTACTATGGACACCGTCCAAGGTAACCCGACGCTTGGGAAGAGAAATAAATGATGAGAGTTCATATCTTTATTGGGCCTATAAGAATCTTAAAATTTTAAAGACGCAGCTCTGGTTGAGAAACCTACATAGTTTACTTATGATGTCAAGATCTTTATTAGGTCCAGACAGCCACAATTTGGACCACGAAGTTGTAGAAGTTTTGCAATTTAAAACAGATGCATTTGATATTATGCAGAACAATATTCCAGTCTTCTGCCCAGGATTAACAGATGGGTCATTGGGAGACATGTTGTACTTCCACTCTTTTCGTAATCCTGGCTTGATCATTGACGTCGTTCAAGACTATGCTGTCTTCATTAACACCGCTCAAGAGTTCGATGGAAGTGACTCTGGAGCTCGCCCAGATGAGGCTGTCTCTTGGGGCAAAATTCGAGGTTCGGCCAAGACTGTCAAGGTACATTGCGACGCCACAATCGCTTTCCCATTGCTCGTTGCAGAAACATTTGCCTCAAGAAGAGAAAAGGAAAAGGAGATCTCGTTCACCAAAAGCTACAAATCACAAATCACACCATCATTGCTTGACAGTTGCACATTGATCTCGTTCAGGGGTTCGAATCTATTGCCCCAAAAATCCACCGAATTCCAATTTCAGCCCGAAATAGGCGAAGAAAGAAGAAAGGGCCAAAGAAGAGAGAAAGAGCTGAAGAACATCTCAACTTCGGCTTCCACCGGCGACAACCCTCTTTTTCCCCATTTCATTCTTCCATATTCACTGATTATGCCAGACGTGCAAGCCCTTGTGAATGATTTCGTTATCAAGCTTAAGAGGCGTAAAATTGAGGGCTCCTTGGCCACCGCGAAGCATACGGCTGAATTGCTTCGGTCTGTCATTTCACAGCAGCGAATACCCTACACGAATCAGGCGGCTGCTTTGATTGATGCTGTGAAAGCTGTTGGCGAGCAGCTGATTGCTGCGAATCCTGTTGGTAGATATATTAATTTTTTTTATTATAGCTTAAAACCCCAGTCTGTCTGTTTGGGATTTTACCCTTTACAAAATTCAACTTATTTCCATGGCTGCTTCTTATTTAGGCTGAAAATGAGTCAGCTTGCTGTGGGCAATATTGTGAGGCGGGTTTTGCACATTATTAGAGAGGAGGATCTCTCACTCACCACAGCTTCTATTGCTGGGTTGAGCTTATCGGCAGTTAGTGATGATGAAGATGACATTGAAAAAGATGATCGCCCGGTCCTCTCAGCTGCTGCTGTTGCAGCTGCTGCAAGAAGCACTTTGCGGCCACCTTCCTTGCAAACTCTTCTTGAGGATGTTCCTAATCAAACATCGGTTCATCAAACTTCATCATCTGGAGCTGCTGATAAAAGTTCAAGGAGTCGGAAGCTCAAGCATGATGTAATTGAAGCTGTTAATGAGCTTATTCAGGATATTGCAACTTGTCATGAACAGATTGCTGAGCAAGCAGTGGAGCACATTCATCAGAACGAGGTAATATTAACTTTGGGGAGTTCCAGAACAGTATTGGAATTTCTTTGTGCTGCTAAGGAGAAGAAAAGGTCCTTCCGGGTGTTTGTTGCTGAGGGTGCTCCAAGTGGGATGGACATTACAACTGATGAGATGGTGTCATCTTCAAATCTGTTCTGCAAGGTAATAGTTGGAGCTCATGCTGTCATGGCAAATGGTGGTGTCATGGCACCAGTCGGATTGAATATGGTGGCTCTTGCAGCTAAAAGGCATGCTGTTCCTTTTGTCGTGCTAGCTGGAAGTCACAAGGTGCTGTTCCTTTTCACGAAATTTTCTTCTATTATAATTCTACCCAAAATTTTATGCCCTTTGTATCCTCACAATCCCGAAGTTCTACTCAATGAACTGAGGTCCCCATCAGAGCTACTGGACTTTGGTGAATTTTCAGATTGCATGGACTTTGGAACTAACTCTGGTTCTCCTCTTCTCCATGTAGTCAACCCTACATTTGACTATGTGCCACCATCACTTGTTAGTTTATTTATTACTGACACAGGTGGCCATAACTCATCATACATGTATCGGCTTATTGCTGATTACTATTCAGCCGATGATTTGAAGTATAAAACTGTTCTCTTGAGGATGGCATCTGGAAGTCCTTATTTTGATGATTTGCGGAGCAAACCAGAGGTTATTGATCCTCCCCAGAATGAAGATATGATGGACATCAGGGAAACTGTGGACGATCCAGTTCAAAATGAACTTAAACCGAACGTCGCTGTTTCCAGCAGCGTTCGTGAGCTTTTGGAATGCCCAGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGCCACACACTGTGCTCTGGTTGTAAGCCTCGGGTGCACAATCGTTGCCCTACGTGTAGGCATGAACTTGGCAATATTAGATGCCTTGCGTTGGAGAAGGTGGCTGCATCTCTAGAACTTCCGTGTAAATATCATACCTATGGTTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGCTGTCCATATGCTGGATCCGAATGTTCAGTTGTCGGTGATATTCCCTATTTGGTGACCCACCTGAAAGACGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGTTATGTAAAATCAAACCCACAAGAAGTTGAAAATGCAACGTGGATGCTAACGGTAATTTTCCTCACAACCACGCTGCCCACTCTGTTCCTTGCCCTCTTAGGCAGGCAAATCTCATTGGCATTTCTTATGCACATTGTGAGCATTAGAATCATTTGCTTTGGTCAGTACTTTTGCCTGCATTTCGAAGCTTTCCAGCTTGGGATGGCTCCAGTATACATAGCTTTTTTACGGTTCATGGGCGACGATAATGATGCAAAGAACTACAGCTATAGTCTTGAGGTGGGTGGCAATGGGAGGAAGATGGTATGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGAAAAGTTCGGGACAGTTTCGATGGGCTCATTATCCAACGCAACATGGCTCTCTTTTTCTCCGGAGGGGACCGGAAGGAACTAAAGCTTAGGGTGACTGACCTGGAAGTAGGTTAA 3738 43.29 MTESLGQMENNNVMASVHATVFKESEDLEGKSSKIEGYDFNQGLSYSNLIRSMISTGFQASNLGDAIEVVNKMLDWRLADENLTEDCSEEEKDPIFRESTRCKVFLGFTSNLISSGVRDTIRYLVEHHMVDVIVTTTGGIEEDLIKCLAPTYKGDFSLPGAVLRSKGLNRIGNLLVPNANYCKFEDWIIPILDQMLKEQLEENVLWTPSKVTRRLGREINDESSYLYWAYKNLKILKTQLWLRNLHSLLMMSRSLLGPDSHNLDHEVVEVLQFKTDAFDIMQNNIPVFCPGLTDGSLGDMLYFHSFRNPGLIIDVVQDYAVFINTAQEFDGSDSGARPDEAVSWGKIRGSAKTVKVHCDATIAFPLLVAETFASRREKEKEISFTKSYKSQITPSLLDSCTLISFRGSNLLPQKSTEFQFQPEIGEERRKGQRREKELKNISTSASTGDNPLFPHFILPYSLIMPDVQALVNDFVIKLKRRKIEGSLATAKHTAELLRSVISQQRIPYTNQAAALIDAVKAVGEQLIAANPVGRYINFFYYSLKPQSVCLGFYPLQNSTYFHGCFLFRLKMSQLAVGNIVRRVLHIIREEDLSLTTASIAGLSLSAVSDDEDDIEKDDRPVLSAAAVAAAARSTLRPPSLQTLLEDVPNQTSVHQTSSSGAADKSSRSRKLKHDVIEAVNELIQDIATCHEQIAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPSGMDITTDEMVSSSNLFCKVIVGAHAVMANGGVMAPVGLNMVALAAKRHAVPFVVLAGSHKVLFLFTKFSSIIILPKILCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDFGTNSGSPLLHVVNPTFDYVPPSLVSLFITDTGGHNSSYMYRLIADYYSADDLKYKTVLLRMASGSPYFDDLRSKPEVIDPPQNEDMMDIRETVDDPVQNELKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYHTYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSVVGDIPYLVTHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVIFLTTTLPTLFLALLGRQISLAFLMHIVSIRIICFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTDLEVG 1245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9337291 9366264 + Lsi09G008150.1 Lsi09g00815 670428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00815 1245 Gene3D Deoxyhypusine synthase 16 233 IPR036982 GO:0008612
Lsi09g00815 1245 MobiDBLite consensus disorder prediction 646 669 - -
Lsi09g00815 1245 MobiDBLite consensus disorder prediction 646 664 - -
Lsi09g00815 1245 SUPERFAMILY TRAF domain-like 1021 1111 - -
Lsi09g00815 1245 Pfam Seven in absentia protein family 1010 1240 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lsi09g00815 1245 ProSiteProfiles Zinc finger SIAH-type profile. 1021 1081 IPR013010 GO:0008270
Lsi09g00815 1245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 1143 1241 - -
Lsi09g00815 1245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 918 1112 - -
Lsi09g00815 1245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1021 1076 IPR013083 -
Lsi09g00815 1245 Gene3D Deoxyhypusine synthase 279 317 IPR036982 GO:0008612
Lsi09g00815 1245 Gene3D Deoxyhypusine synthase 318 384 IPR036982 GO:0008612
Lsi09g00815 1245 SUPERFAMILY NagB/RpiA/CoA transferase-like 466 902 IPR037171 -
Lsi09g00815 1245 ProSiteProfiles Zinc finger RING-type profile. 968 1004 IPR001841 -
Lsi09g00815 1245 SUPERFAMILY DHS-like NAD/FAD-binding domain 16 232 IPR029035 -
Lsi09g00815 1245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 931 1020 IPR013083 -
Lsi09g00815 1245 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 918 1112 - -
Lsi09g00815 1245 SUPERFAMILY RING/U-box 962 1009 - -
Lsi09g00815 1245 Pfam Deoxyhypusine synthase 49 318 IPR002773 GO:0008612
Lsi09g00815 1245 CDD RING-HC_SIAHs 966 1004 - -
Lsi09g00815 1245 Gene3D - 689 897 IPR042529 -
Lsi09g00815 1245 Pfam Initiation factor 2 subunit family 660 885 IPR000649 GO:0044237
Lsi09g00815 1245 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1143 1241 - -
Lsi09g00815 1245 SUPERFAMILY TRAF domain-like 1144 1240 - -
Lsi09g00815 1245 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1124 1240 IPR008974 GO:0005515
Lsi09g00815 1245 SUPERFAMILY DHS-like NAD/FAD-binding domain 281 376 IPR029035 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00034 Lsi-Chr4:495319 Lsi09g00815 Lsi-Chr9:9337291 0 dispersed
Lsi06g00347 Lsi-Chr6:3810851 Lsi09g00815 Lsi-Chr9:9337291 2.27E-07 dispersed
Lsi06g01356 Lsi-Chr6:24139308 Lsi09g00815 Lsi-Chr9:9337291 3.11E-07 dispersed
Lsi06g01357 Lsi-Chr6:24147933 Lsi09g00815 Lsi-Chr9:9337291 4.79E-08 dispersed
Lsi09g00815 Lsi-Chr9:9337291 Lsi09g01813 Lsi-Chr9:26927415 2.71E-144 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00815 K03754 - csv:101220366 630.172