Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00817 ATGTCAACCCAGCAGCAGAATTCTGATTCAAATGGCGTTTCAGATCATATTGACGTATTCTATCCTCAACAACATGTGCTTCATAGTCAAGATGGAACAAAATCAGCTGCTATTCTAAGTGTGTTGATAGGCGCCTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGCCGGATGCCCTCTGGGTCTGGGTTTCTTTTCCTACTAAATCTGCCTTCCAGATTCTGGCCAACTATGGTTCTTCTCATCTACGAGATCCTCCAAGGCCCCCAAAAAAGGTTAGAAGAGCTGTTGCGGCAGTCTGGTAATAAGTTTTGTGCAGATTGCGGAGCACCGGATCCAAAATGGGTATCTTTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAATCTTGGTGTTCATATCTCTAAGGTTTTCTCAGTGAAACTAGATAATTGGACGGATGAACAAGTCAATACTTTGATGAGCATGGGCGGAAACACAGATGTAAACAAGAAGTATGAAGCTGGCATCATCGATGGGCACAGAAAACCGAAACCAGATTCGTGTATAGAGGAGCGCTTCGATTTTATAAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCAATAGTCAAAATTCTAGCGATAACTACTCATTTAGTAAAAGAAGTTCATCATGCTCCCAAAGTAGTAACTCTTCAAGCAAGAATGGTAGCCACGACAAAAGACACTATGATAAACAAACTACTAGGCATCGCATCGGGCACGCATTTCGTAACAGCCGAGGAAGAAGAGATAGTGACCACAAGAGTTTTGACAAGAGCAGCCCTGCAGTCTCAAGACAAGCATCGGCAGGTATGGTTGAATTTGTTGGCTTGGTTAAGGTCAATGTGGTTAAAGGCACAAATCTAGCCGTTCGAGACGTGGTGACCAGCGATCCCTATGTAATTCTCATGTTGGGTCATCAGTCAGTGAGGACTCGTGTCATAAAGAACAACCTAAACCCAGTTTGGAATGAGAGCTTGATGTTGTCGATTCCCGAGCATATCCCTCCGCTAAAACTGCTTGTCTATGATAAGGACACATTTTCAACTGATGACTTTATGGGTGAGGCCGAAATCGACATTCAACCGTTGGTCGCTGCGACCAAGGCCTATGAGAAGTCTACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCAAGTAATGACAATACCTTGGTAAAAGACGGAATCATTAACCTTGTAGACGGGAAGGTCAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTATCCTTGAGATTGAACTAGAATGCATTCCTCTTACACAATAG 1362 43.1 MSTQQQNSDSNGVSDHIDVFYPQQHVLHSQDGTKSAAILSVLIGACLFDLLFPDSEMQGWDWSRMPSGSGFLFLLNLPSRFWPTMVLLIYEILQGPQKRLEELLRQSGNKFCADCGAPDPKWVSLNLGVFICIKCSGVHRNLGVHISKVFSVKLDNWTDEQVNTLMSMGGNTDVNKKYEAGIIDGHRKPKPDSCIEERFDFIRRKYELLQFYNANSQNSSDNYSFSKRSSSCSQSSNSSSKNGSHDKRHYDKQTTRHRIGHAFRNSRGRRDSDHKSFDKSSPAVSRQASAGMVEFVGLVKVNVVKGTNLAVRDVVTSDPYVILMLGHQSVRTRVIKNNLNPVWNESLMLSIPEHIPPLKLLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGILEIELECIPLTQ 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9387587 9399909 + Lsi09G008170.1 Lsi09g00817 670430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00817 453 CDD ArfGap 100 206 - -
Lsi09g00817 453 ProSiteProfiles C2 domain profile. 278 395 IPR000008 -
Lsi09g00817 453 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 94 453 IPR044518 GO:0005096|GO:0005543
Lsi09g00817 453 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD11-RELATED 94 453 - -
Lsi09g00817 453 PRINTS HIV Rev interacting protein signature 109 128 IPR001164 GO:0005096
Lsi09g00817 453 PRINTS HIV Rev interacting protein signature 149 170 IPR001164 GO:0005096
Lsi09g00817 453 PRINTS HIV Rev interacting protein signature 128 145 IPR001164 GO:0005096
Lsi09g00817 453 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 294 388 IPR035892 -
Lsi09g00817 453 SUPERFAMILY ArfGap/RecO-like zinc finger 97 213 IPR037278 -
Lsi09g00817 453 MobiDBLite consensus disorder prediction 218 283 - -
Lsi09g00817 453 Gene3D C2 domain 296 450 IPR035892 -
Lsi09g00817 453 MobiDBLite consensus disorder prediction 218 241 - -
Lsi09g00817 453 CDD C2_ArfGAP 296 440 - -
Lsi09g00817 453 SMART arf_gap_3 97 220 IPR001164 GO:0005096
Lsi09g00817 453 MobiDBLite consensus disorder prediction 265 280 - -
Lsi09g00817 453 Pfam Putative GTPase activating protein for Arf 98 213 IPR001164 GO:0005096
Lsi09g00817 453 Gene3D Arf GTPase activating protein 92 220 IPR038508 -
Lsi09g00817 453 SMART C2_3c 298 393 IPR000008 -
Lsi09g00817 453 ProSiteProfiles ARF GTPase-activating proteins domain profile. 97 219 IPR001164 GO:0005096
Lsi09g00817 453 Pfam C2 domain 298 388 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00082 Lsi-Chr1:798897 Lsi09g00817 Lsi-Chr9:9387587 2.37E-105 dispersed
Lsi04g00033 Lsi-Chr4:476752 Lsi09g00817 Lsi-Chr9:9387587 1.53E-179 dispersed
Lsi06g01282 Lsi-Chr6:23371671 Lsi09g00817 Lsi-Chr9:9387587 9.59E-31 dispersed
Lsi07g00388 Lsi-Chr7:4139003 Lsi09g00817 Lsi-Chr9:9387587 1.78E-19 dispersed
Lsi07g01197 Lsi-Chr7:17460274 Lsi09g00817 Lsi-Chr9:9387587 1.00E-18 dispersed
Lsi09g00817 Lsi-Chr9:9387587 Lsi02g00943 Lsi-Chr2:9334771 1.52E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00817 K12486 - csv:101215531 696.427