Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi09g00822 | ATGGCGCTCGCTGATAAACCCTCTCGCCAGTCTCTGATCCCCAGCTTCCTTTACTCTTCCCCTTCTTCCACTCGAACCCTCCCTCTCAAGAAGATGCTTCAATCTTCACCCACTCTCGATGCTGTTTCCTCTCCTCCTAAGAGCTTTGTTATTCCCGCTCCCACCGAGCCGTCTAAGAAGATCGAGATGTACTCTCCAGCCTTCTACGCTGCTTGTACTTTTGGTGGAATTCTCAGCTGTGGTCTTACGCATATGACTGTTACTCCTCTTGATTTGGTTAAATGCAATATGCAGATTGATCCTGCGAAATACAAAAGTATTTCGTCTGGTTTTGGAGTTTTGCTCAAGGAGCAGGGTGTGAGGGGTTTCTTCAGGGGTTGGGTGCCTACTCTCCTTGGATACAGTGCACAGGGTGCCTGCAAGTTTGGCTTCTACGAGTTCTTTAAGAAGTATTACTCTGATATTGCTGGACCTGAGTACGCAGCTAAGTACAAGACCTTGATCTACCTTGCGGGTTCTGCATCTGCTGAGGTGATTGCTGATGTTGCACTTTGCCCTTTCGAAGCAGTGAAGGTTCGGGTTCAAACTCAGCCTGGTTTTGCTAGAGGTCTATCAGATGGACTTCCCAAGTTTGTCAGATCTGAAGGAACTCTAGGGTACGTTGTACAAGGGTATAGTTCCACTCTGGGGACGCCAGATTCCATCGCTTTTCTTTCAGACACGATGATGAAGTTTGCATCCTTTGAGACAATAGTTGAGATGCTATACAAGTATGCCATTCCCACACCAAAGGACCAGTGCAGCAAATCTCTCCAGCTTGGTGTTAGTTTTGCCGGTGGATATGTGGCTGGTGTTTTCTGTGCTATTGTGTCTCATCCTGCTGATAATCTCGTTTCGTTCCTCAACAATGCCAAAGGAGCAACTGTTGGTGATGCTGTCAAGAAGCTCGGATTATGGGGTCTCTTCACCCGTGGGCTACCCCTCCGTATTGTGATGATTGGAACTCTTACTGGTGCTCAGTGGGGTATCTATGATGCCTTCAAAGTATTTGTTGGACTGCCTACTACTGGTGGCCCATCACCTGCTGCCCCTGCACCTGCTGCTGCTGAGCTTGCAAAGGCGTGA | 1125 | 48.36 | MALADKPSRQSLIPSFLYSSPSSTRTLPLKKMLQSSPTLDAVSSPPKSFVIPAPTEPSKKIEMYSPAFYAACTFGGILSCGLTHMTVTPLDLVKCNMQIDPAKYKSISSGFGVLLKEQGVRGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYAAKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVRSEGTLGYVVQGYSSTLGTPDSIAFLSDTMMKFASFETIVEMLYKYAIPTPKDQCSKSLQLGVSFAGGYVAGVFCAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGPSPAAPAPAAAELAKA | 374 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 9426207 | 9430417 | - | Lsi09G008220.1 | Lsi09g00822 | 670435 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi09g00822 | 374 | PANTHER | SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED | 1 | 366 | IPR044677 | GO:0005315|GO:1990547 | |
| Lsi09g00822 | 374 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 271 | 350 | IPR018108 | - | |
| Lsi09g00822 | 374 | SUPERFAMILY | Mitochondrial carrier | 70 | 346 | IPR023395 | - | |
| Lsi09g00822 | 374 | Pfam | Mitochondrial carrier protein | 70 | 153 | IPR018108 | - | |
| Lsi09g00822 | 374 | Pfam | Mitochondrial carrier protein | 168 | 258 | IPR018108 | - | |
| Lsi09g00822 | 374 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 67 | 151 | IPR018108 | - | |
| Lsi09g00822 | 374 | PANTHER | MITOCHONDRIAL PHOSPHATE TRANSPORTER | 1 | 366 | - | - | |
| Lsi09g00822 | 374 | Gene3D | Mitochondrial carrier domain | 68 | 349 | IPR023395 | - | |
| Lsi09g00822 | 374 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 164 | 254 | IPR018108 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi05g00457 | Lsi-Chr5:5824029 | Lsi09g00822 | Lsi-Chr9:9426207 | 4.53E-106 | dispersed | |
| Lsi06g01674 | Lsi-Chr6:26967425 | Lsi09g00822 | Lsi-Chr9:9426207 | 0 | dispersed | |
| Lsi09g00822 | Lsi-Chr9:9426207 | Lsi11g01295 | Lsi-Chr11:21591833 | 1.85E-87 | dispersed | |
| Lsi09g00822 | Lsi-Chr9:9426207 | Lsi02g02791 | Lsi-Chr2:34149266 | 3.46E-07 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi09g00822 | K15102 | - | csv:101221771 | 642.499 |