Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00831 ATGTCTTCTTCTCTTTCATGGTTCTTCTTCTTTTCCCTCTCCTTTACGTTTACCGGTACGGCCGCCTCGGTTTCCGATGATGCAATGTCGCTCCTCATGTTTAAGGGCTCGATTTCCCTCGGCGGCTCTGATGTTCTTCGTGGCTGGAATTTGTCGGTTTCTCACTGCGATTGGTTTGGAGTTACTTGCGATGGTGGTAACGCTAGAGTTATTGCGCTGAATATCAGTGGAAAGGGTGGTGTTATGGCGGCGGGTTCTTTTCTGGCTGGGACGTTGAATCCGGCGATTGGAAATCTTGTTGAGCTTCGCGTTTTGTCGCTTCCGAATAATTTGATGTACGGGGAGGTTCCGGGAAGTGTTGGTAAGCTTCAGTCGTTGGAGGTTCTTGAGCTTCAGGGGAACAATTTCTCTGGAGAGATTCCGAATCAGATGAGTTCACTTCGATCTCTTCGGCTGCTTAATTTGTCTGATAACTCGTTTTCTGGCTCGATTCCGAGTAAATTGATCGGTTCGACGAAACTAGAAGCAATTGATTTGTCGTACAATCAATTATCTGGGAGTATTCAAGTTATTGATACTAGATGTGGTGCTTTGAATCATTTGAGGCTTTCGCATAACTTTCTGACTAATAACATTCCGGCGGAGATTGGACAATGTTGGAAACTCAGGACTCTGTTACTCGATGGTAATATATTAGAGGGCCAAATTCCGGCTGAGATCGGCCAAATATCAGAACTCAGAATTCTTGATGTTTCTAGGAATAGCCTTACCGATTCGATTCCAAAGGAGCTTGGTAATTGCCGGAAGTTGTCACAGATCATGTTGACGAATTTGAACGATATCAATCCCGACGACGATAGTTTAAGAGGGGAATTCAACGCTTTCAATGGAGGTATTCCTTCTGAGTTGTTATTGCTTCCAAGTCTGCAAGTTTTATGGGCACCGAGAGGAAATTTTAATGGCAAATTTCCGATTAATTGGAGTTCTTTATGCTCGCTTAGAGTTCTCAATTTAGGGCAAAATTACATCACTGGTACCATACCCGAATCGATTGGGAAATGCGCAAATCTAACTTACCTGGATTTATCTTCAAACAAGCTTCAAGGTAACCTCCCTTCCCAGCTTCGAGTTTCATGTATGGCGTATTTCAATGTTAGCCAGAACAAAATTTTTGGTGTTCTTCCCAGATTGGAGAAAGACAGTTTCTGTACGAACATGATTTCACACGAACCAGCTCCCAGGTTCTTAGATCAGGAAGACGATTGGAATTCTTACTTCAATTTTCCTGTTTGGGATTTCCCGAGATCAAATGATAATCTCATAATTGCCCATGATTTTAGCTGGAATAGGTTCAGTGGCTCATTAACTTCAGTCAAAGTGGGGGAAGAGCTTTTGGTTAATGGCCGCAAGTTCTCATACAAACTGTTGCTTAATAGCAACCAGTTCAATGGATCACTTCCCATTGATCTAGTCTCGAACTGTAATGATATGAAGGGCGTTTCGGTTAACTTGAGTTCAAACTTAGTATCAGGTGAGATTTCTGATGCATTTTTTCTCCATTGTCGACAAATGATAGAGTTTGAGGCAGCAAGTAATGAATTAGATAACTCGATTGGACCTCGAATTGGTGACTTGCAGATGCTTCTTCGTCTTGACTTGAGAGGGAATAGATTGTCTGGAGTTTTACCTGATCAGTTGGGGAACTTGCAGAGTTTGAAATGGATGCTTTTGGGGGGAAACAATTTGACTGGAGAGATTCCATCTCGACTTAGTCGATTGACTTCTCTCGTGAGTTTAGATCTTTCTCGAAACATGTTTACAGGAGTTATCCCTGAAAGCTTGTCATATGCTTCAAGACTTGAGATTCTGTTGCTTGATCATAACAGGTTAACTGGGGAAATACCAGTATCTTTCTCTGCCCTTTCACATCTCACTAAATTGGATGTCTCTTTTAACAACCTTTCTGGCCACATTCCTCATCTTCAGCACACGTTTGACTGCATTTACTTTGGTGGGAATAAGTTTCTGCATCCATGCCCAGATTCATACTCCGACTCCCCAGCTGGACTTCCGGTTCCTCTCGACGTTGAGAAGTGGAAGAGACGAAGAAAGTTTATGTCCATGATAATCGCTGTGGCTGCTTCCTCAACTCTAATTTGCTTACTCTTAATGATAGCTGTTATCATCATTGTCAAGAGAAGGCTTGGTAAACAAAATAGGTTAAAGAAGAAACAAGTGGTGACTTTCTCAGATGCTCCTTCCGATCTGAATTATGATAATGTGGTCCGAGCTACCGAGAATTTCAGCCTTCGTTACCTTATTGGTACAGGTGGCTTTGGATCAACATACAAGGCTGAACTGCCCTCAGGTTTCCTGGTTGCTGTAAAGAGACTGTCCATTGGTAGGTTTCAAGGAGGCATCCAACAATTCGACACAGAAATTCGAACTTTGGGAAGAATACGACACAAAAACCTCGTAACTCTTCTCGGGTACTACGTCGCAGAGGCTGAAATGTTCTTAGTTTACAACTATCTATCTGGTGGGAACCTTGAGACTTTCATTCACGAAAAGTCTTGCAAACACGTAAAGCACTCGGTTATCCACAAGATCGCTTTGGACATAGCGAGGGCTCTTGCATACCTTCATTACTCCTGTGATCCTAGGATTGTTCATAGAGACATCAAACCTAGTAACATCCTGCTTGATGAAGACCACAACACCTACATATCAGATTTTGGGTTGGCAAGGCTTCTTGAGGTTTCAGAGACTCATGCCACAACAGATGTGGCAGGAACATTTGGATATGTTGCACCAGAATATGCTACAACTTGCAGGGTCTCGGATAAGGCCGATGTTTATAGCTTTGGAGTTGTACTCCTAGAGTTGCTTTCTGGAAAAAGATCACTCGATCGATCCTTTTCCGACTTTGGGAACGGATTTAACATTGTTACATGGGCAAATATGCTGATCAAAGAAGGTCGTTTTTCTGAGCTTTTCACTCCTCAACTTTGGGAAATGGGACCTAAGGAACACTTACTTGGAATGTTAAAGCTCGCGTCTAATTGCACAGTTGAAATTCTCGCTCTTCGACCGTCGATGAAGCAGGTCGTCGAGACACTGAAACAGTTGTAA 3132 42.75 MSSSLSWFFFFSLSFTFTGTAASVSDDAMSLLMFKGSISLGGSDVLRGWNLSVSHCDWFGVTCDGGNARVIALNISGKGGVMAAGSFLAGTLNPAIGNLVELRVLSLPNNLMYGEVPGSVGKLQSLEVLELQGNNFSGEIPNQMSSLRSLRLLNLSDNSFSGSIPSKLIGSTKLEAIDLSYNQLSGSIQVIDTRCGALNHLRLSHNFLTNNIPAEIGQCWKLRTLLLDGNILEGQIPAEIGQISELRILDVSRNSLTDSIPKELGNCRKLSQIMLTNLNDINPDDDSLRGEFNAFNGGIPSELLLLPSLQVLWAPRGNFNGKFPINWSSLCSLRVLNLGQNYITGTIPESIGKCANLTYLDLSSNKLQGNLPSQLRVSCMAYFNVSQNKIFGVLPRLEKDSFCTNMISHEPAPRFLDQEDDWNSYFNFPVWDFPRSNDNLIIAHDFSWNRFSGSLTSVKVGEELLVNGRKFSYKLLLNSNQFNGSLPIDLVSNCNDMKGVSVNLSSNLVSGEISDAFFLHCRQMIEFEAASNELDNSIGPRIGDLQMLLRLDLRGNRLSGVLPDQLGNLQSLKWMLLGGNNLTGEIPSRLSRLTSLVSLDLSRNMFTGVIPESLSYASRLEILLLDHNRLTGEIPVSFSALSHLTKLDVSFNNLSGHIPHLQHTFDCIYFGGNKFLHPCPDSYSDSPAGLPVPLDVEKWKRRRKFMSMIIAVAASSTLICLLLMIAVIIIVKRRLGKQNRLKKKQVVTFSDAPSDLNYDNVVRATENFSLRYLIGTGGFGSTYKAELPSGFLVAVKRLSIGRFQGGIQQFDTEIRTLGRIRHKNLVTLLGYYVAEAEMFLVYNYLSGGNLETFIHEKSCKHVKHSVIHKIALDIARALAYLHYSCDPRIVHRDIKPSNILLDEDHNTYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWANMLIKEGRFSELFTPQLWEMGPKEHLLGMLKLASNCTVEILALRPSMKQVVETLKQL 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9526594 9529725 - Lsi09G008310.1 Lsi09g00831 670444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00831 1043 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Lsi09g00831 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Lsi09g00831 1043 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515
Lsi09g00831 1043 Pfam Leucine rich repeat 329 367 IPR001611 GO:0005515
Lsi09g00831 1043 Pfam Leucine rich repeat 595 654 IPR001611 GO:0005515
Lsi09g00831 1043 Gene3D Ribonuclease Inhibitor 24 194 IPR032675 -
Lsi09g00831 1043 Gene3D Ribonuclease Inhibitor 284 412 IPR032675 -
Lsi09g00831 1043 Gene3D Ribonuclease Inhibitor 195 283 IPR032675 -
Lsi09g00831 1043 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 5 1043 - -
Lsi09g00831 1043 Pfam Protein kinase domain 773 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00831 1043 Gene3D Phosphorylase Kinase; domain 1 730 844 - -
Lsi09g00831 1043 ProSiteProfiles Protein kinase domain profile. 768 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00831 1043 CDD STKc_IRAK 774 1043 - -
Lsi09g00831 1043 SUPERFAMILY L domain-like 294 673 - -
Lsi09g00831 1043 Gene3D Transferase(Phosphotransferase) domain 1 845 1043 - -
Lsi09g00831 1043 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 5 1043 - -
Lsi09g00831 1043 SUPERFAMILY Protein kinase-like (PK-like) 745 1040 IPR011009 -
Lsi09g00831 1043 ProSitePatterns Protein kinases ATP-binding region signature. 774 796 IPR017441 GO:0005524
Lsi09g00831 1043 SMART LRR_typ_2 593 616 IPR003591 -
Lsi09g00831 1043 SMART LRR_typ_2 641 667 IPR003591 -
Lsi09g00831 1043 SMART LRR_typ_2 330 354 IPR003591 -
Lsi09g00831 1043 SMART LRR_typ_2 243 267 IPR003591 -
Lsi09g00831 1043 SMART LRR_typ_2 545 568 IPR003591 -
Lsi09g00831 1043 SMART LRR_typ_2 147 171 IPR003591 -
Lsi09g00831 1043 SMART LRR_typ_2 123 146 IPR003591 -
Lsi09g00831 1043 SMART LRR_typ_2 195 219 IPR003591 -
Lsi09g00831 1043 Gene3D Ribonuclease Inhibitor 423 688 IPR032675 -
Lsi09g00831 1043 SMART serkin_6 768 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00831 1043 SUPERFAMILY RNI-like 89 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00990 Lsi-Chr7:13628017 Lsi09g00831 Lsi-Chr9:9526594 0 dispersed
Lsi09g00831 Lsi-Chr9:9526594 Lsi05g01804 Lsi-Chr5:25311429 8.46E-140 dispersed
Lsi09g00831 Lsi-Chr9:9526594 Lsi01g00847 Lsi-Chr1:6791970 6.96E-142 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83895 PF00069 Pkinase 1.00E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00831 - - csv:101202920 1845.48