Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00863 ATGTCTGGTTCTGATGGCGTCAACAACAACAATGGCGCCATAATCGACCATTCTCAACAACAGAGACATCACCAACAACAACAACAGCAGCAGCAGCAACTACAGGGGAATCAGTCTAACAACAATGGCGCGTTGGCCATCAAAAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGCCGTATTCGTATGCCCATCGTTTGCGCCGCTCGCGTTTTTCAACTCACCCGCGAATTGGGCCACAAATCCGACGGTCAGACTATCGAATGGCTCCTCCGTCAAGCAGAGCCGTCTATTATCGCCGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCCAGCATCTCCGCCTCACTCCGAGGCACTCCTGCCGCCGCTTCCTCTTCTTCCTCTCTCGACCATAAGCCCCTTTTGGCTCCGGCGCCCTTCATTTTAGGTAAACGCGTCAGAACCGACGACGATGGAGCTAATAAAGACGACGGCAGTGGCGGTGGAGGTGGCATTTCGGTCGGCCCCACTATTGGTTCGATTATGGGTCCGGCTGCCGCAGGTGGGTACTGGGCGATTCCCGCGAGGTCGGATTTCGGACAGGTGTGGAGCTTTGCGGCGGCGGCAGCTCCGGAGATGGTGATTCAACCAACCGCCGTTTCTCACCAGGCGTCGCTGTTCGTTCAGCAGCAATCAATGGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCAGGGCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACCGGGAAGTTCCGGCCGAAGAGACAACGACCATCGTTGA 813 57.2 MSGSDGVNNNNGAIIDHSQQQRHHQQQQQQQQQLQGNQSNNNGALAIKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSISASLRGTPAAASSSSSLDHKPLLAPAPFILGKRVRTDDDGANKDDGSGGGGGISVGPTIGSIMGPAAAGGYWAIPARSDFGQVWSFAAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9968549 9969361 - Lsi09G008630.1 Lsi09g00863 670476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00863 270 Pfam TCP family transcription factor 52 137 IPR017887 -
Lsi09g00863 270 MobiDBLite consensus disorder prediction 1 46 - -
Lsi09g00863 270 MobiDBLite consensus disorder prediction 153 172 - -
Lsi09g00863 270 MobiDBLite consensus disorder prediction 1 64 - -
Lsi09g00863 270 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 267 - -
Lsi09g00863 270 MobiDBLite consensus disorder prediction 49 64 - -
Lsi09g00863 270 ProSiteProfiles TCP domain profile. 52 106 IPR017887 -
Lsi09g00863 270 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 267 IPR005333 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00863 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - csv:101214586 386.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00863 Lsi-Chr9:9968549 Lsi09g01743 Lsi-Chr9:26074586 4.58E-35 dispersed
Lsi04g00792 Lsi-Chr4:7451543 Lsi09g00863 Lsi-Chr9:9968549 3.01E-101 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00863 . 50 270 TCP Transcription Factor Family AT5G23280 64.0 1.7e-66 249.6
Lsi04g00792 . 37 258 TCP Transcription Factor Family AT5G23280 60.3 1.6e-61 233.0
Lsi09g01921 . 59 337 TCP Transcription Factor Family AT2G45680 54.1 2.0e-65 246.5
Lsi04g00434 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Lsi02g00060 CCT,ECH 17 115 TCP Transcription Factor Family AT3G47620 83.8 2.7e-39 160.2
Lsi04g00710 . 135 217 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Lsi04g00710 . 135 227 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Lsi07g01491 . 48 315 TCP Transcription Factor Family AT3G27010 56.9 1.5e-59 226.9
Lsi09g00863 . 46 269 TCP Transcription Factor Family AT5G08330 62.1 1.2e-64 243.4
Lsi04g00792 . 9 256 TCP Transcription Factor Family AT5G08330 56.0 8.4e-63 237.3
Lsi04g00710 . 134 365 TCP Transcription Factor Family AT1G35560 50.4 4.7e-43 172.2
Lsi06g01407 . 32 134 TCP Transcription Factor Family AT5G60970 74.0 8.8e-40 161.4
Lsi07g00939 . 32 138 TCP Transcription Factor Family AT3G02150 69.9 2.4e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25904 PF03634 TCP 3.70E-32 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00863 Lsi_Chr09 FPKM 4.561905 4.010772 3.787949 3.983617 0.0 0.359133 0.0 3.526918 3.471487 2.059398