Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00863 ATGTCTGGTTCTGATGGCGTCAACAACAACAATGGCGCCATAATCGACCATTCTCAACAACAGAGACATCACCAACAACAACAACAGCAGCAGCAGCAACTACAGGGGAATCAGTCTAACAACAATGGCGCGTTGGCCATCAAAAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGCCGTATTCGTATGCCCATCGTTTGCGCCGCTCGCGTTTTTCAACTCACCCGCGAATTGGGCCACAAATCCGACGGTCAGACTATCGAATGGCTCCTCCGTCAAGCAGAGCCGTCTATTATCGCCGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCCAGCATCTCCGCCTCACTCCGAGGCACTCCTGCCGCCGCTTCCTCTTCTTCCTCTCTCGACCATAAGCCCCTTTTGGCTCCGGCGCCCTTCATTTTAGGTAAACGCGTCAGAACCGACGACGATGGAGCTAATAAAGACGACGGCAGTGGCGGTGGAGGTGGCATTTCGGTCGGCCCCACTATTGGTTCGATTATGGGTCCGGCTGCCGCAGGTGGGTACTGGGCGATTCCCGCGAGGTCGGATTTCGGACAGGTGTGGAGCTTTGCGGCGGCGGCAGCTCCGGAGATGGTGATTCAACCAACCGCCGTTTCTCACCAGGCGTCGCTGTTCGTTCAGCAGCAATCAATGGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCAGGGCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACCGGGAAGTTCCGGCCGAAGAGACAACGACCATCGTTGA 813 57.2 MSGSDGVNNNNGAIIDHSQQQRHHQQQQQQQQQLQGNQSNNNGALAIKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSISASLRGTPAAASSSSSLDHKPLLAPAPFILGKRVRTDDDGANKDDGSGGGGGISVGPTIGSIMGPAAAGGYWAIPARSDFGQVWSFAAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSGRRDNDHR 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9968549 9969361 - Lsi09G008630.1 Lsi09g00863 670476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00863 270 Pfam TCP family transcription factor 52 137 IPR017887 -
Lsi09g00863 270 MobiDBLite consensus disorder prediction 1 46 - -
Lsi09g00863 270 MobiDBLite consensus disorder prediction 153 172 - -
Lsi09g00863 270 MobiDBLite consensus disorder prediction 1 64 - -
Lsi09g00863 270 PANTHER TRANSCRIPTION FACTOR TCP21-RELATED 1 267 - -
Lsi09g00863 270 MobiDBLite consensus disorder prediction 49 64 - -
Lsi09g00863 270 ProSiteProfiles TCP domain profile. 52 106 IPR017887 -
Lsi09g00863 270 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 267 IPR005333 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00863 Lsi-Chr9:9968549 Lsi09g01743 Lsi-Chr9:26074586 4.58E-35 dispersed
Lsi04g00792 Lsi-Chr4:7451543 Lsi09g00863 Lsi-Chr9:9968549 3.01E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25904 PF03634 TCP 3.70E-32 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00863 K16221 - csv:101214586 386.726