Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00868 ATGAGTGAAACGATCGAGAATTACTTGAGAAAGAACTTCGACCTCGAGTCGAAGAGTCCGTCAGAGGAGGCTCAAATGCGATGGCGATCCGCCGTCTCTATTGTCAAGAATCGCCGTCGGAGGTTTCGTATGGTTGCTGATCTCGAAAAGCGAGCTGAGGCTGAGGAGAAGCGCAAGAAACTCCAGGAAAAGATACGAGTAGCTCTATACGTACAAAAAGCAGCATTGCATTTCATTGATGTTTCAAAATTGTATATTAATACGCACATACACATTTTTTATTGCTATGTACCAGCCGGGAAGCGAGGTGACTACAAGCTCTCCACAGAAGTTAGGGAAGCTGGTTTTGGAGTTGAACCTGATGCATTAGCATCCATGGTTCAAACCCACAACACCAAGAGTTTGGAACATTATGGGGGCGTTGGGGGATTGGCAAGAGAATTAAACGTTTCTTTGAAAGATGGAATTGTTACAAGTGAAATACCGTCAAGGCAGAACATATACGGCATCAACCGTTATGTTGAGAAGCCTTCAAGAGGCTTTTGGATGTTTGTATGGGAAGCCCTGCATGATTTGACTCTCGTCATTCTCTTGATTTCTGCTGTGGTTTCCATTGGCGTTGGAAATGCAACTGAAGGTTGGCCTAAAGGCATGTACGATGGGCTTGGAATAATAATGAGTATTTTTCTGGTCGTGATAGTAACGGCAATCAGTGACTATAATCAGTCCTTGCAATTTAAGGACTTGGAAAAGCAGAAGAAAAACATTATCATTCAAGTTACTCGAGATGGATGCAGACAGAAGGTTTCTATTTACGACTTGGTGGTTGGAGATATCGTCCATTTGTCTATTGGAGATCAAGTCCCTGCTGATGGCATTTTGGTGTCAGGCTACAGCTTATCACTTGACGAATCGAGCTTATCAGGTGAAAGTGAACCTGTAAATGTAGATGATAATAGGCCTTTTCTTCTAGCAGGGACCAAAGTGCAGGATGGATCTGGTAAAATGCTAGTTTCTTCGGTTGGCATGAGAACTGAATGGGGAAGATTGATGGTCACCTTGAGTGAAGGAGGAGATGACGAAACACCACTTCAGGTAAAGCTTAATGGGGTTGCGACAATCATTGGAAAGATCGGCTTGGTATTCGCTGTGTTAACATTCATAGTTCTGATCTCAAGGTATTTTGTGTCTAAAGCATTACACAATCAGATTGGCCACTGGTCCTCCAAAGATGCATCAATGCTTCTGAATTACTTTGCCATTGCAGTAATTATAATTGTTGTTGCAGTTCCAGAAGGACTGCCTTTGGCCGTGACACTAAGTCTTGCCTTTGCCATGAAAAGGTTAATGAAGGATAAGGCACTTGTGAGGCATCTCTCTGCTTGTGAGACTATGGGTTCTGCAACCTGCATTTGCACTGATAAAACAGGTACATTGACAACAAACCATATGGTCGTCGACAAAATGTGGATCTGTGAAGAAACGAGGACAATAAAAAATTCCCACGACGAAACTGCTTTGAAAAACTCTGTAGATGAAACGGTATACAATATCCTTGTACAATCTATATTTCAAAATACCAGCTCAGAGGTGGTCAAAGGCAAAGACGGGAAAAACACCATTTTAGGCACTCCAACCGAGACTGCATTGCTAGAATTTGGCTTGCTTTTGGGTGGTGCTTTTGGTACATTGAATGATGAGTATAAGATCGTCAAAGTGGAACCATTCAATTCAAATAGAAAGAAAATGTCTGTTCTTGTGGCTCTTCCCGGTGGTGGCTTTCGCGCATTTTGCAAGGGAGCATCAGAAATCATTTTATCTATGTGTGACAAGGTTCTCAGTTCTAATGGAGAAGCATTGCCTCTTTCAGACGAAAAAAGAACAAACATCTCGAATATCATTAATAGCTTTGCCAACGATGCGCTTAGAACTCTATGCATCGCCTACAAGAATATAGAAGGTTTTTCAGCACCAGAAAAAATTCCAGATGATGATTTTACTTTAATAGCTGTTGTTGGCATTAAAGATCCTGTACGTCCGGGTGTAAAGGAGGCAGTTCAGGCTTGTTTGGCTGCTGGAATTACTGTAAGGATGGTAACTGGGGATAACATCAATACGGCTAAAGCCATAGCCAAAGAGTGTGGCATTTTGACAGAAGGTGGTTTAGCAATAGAAGGGCCAGAGTTCCGCAACAAGAGCCAAGATGAAATGGAGAAGTTAATACCAAAACTCCAGGTGATGGCTCGATCATCTCCTCTTGACAAGCATACGTTGGTGGGACAGTTAAGGAAAACGTTCAAAGAAGTGGTGGCTGTCACAGGTGATGGGACTAATGATGCCCCTGCTTTGCATGAGGCAGACATTGGATTGGCCATGGGTATTGCGGGAACAGAGGTTGCAAAAGAAAATGCTGACGTAGTTATAATGGATGATAATTTCACAACCATTGTTAATGTTGCGAGATGGGGACGTGCAGTCTACATCAACATTCAGAAGTTCGTTCAGTTCCAGCTTACAGTCAACGTAGTCGCTCTCATGCTAAATTTTATATCTGCATGCGTTTCAGCTTTGGCCACAGAGCCTCCCAACGAGGGACTGATGCAAAGAAAACCAATTGGGAGAAACGTTAATATCATCACTGGGACTATGTGGAGAAACATCATCGGTCAGAGCATCTACCAAATCACAGTCTTGTTAATCCTCAGATTTGAAGGAAAACGCCTGCTGAATCTCACTGGGATGTTTGGGAGTTGGGTATTCATTGGAGTGATGGCATCGACGGTAGGATTCCAAATCATAATAGTGGAATTTCTTGGGACATTCGCAGAAACAGTAGGATTAAGCTGGAAATTATGGGTAATGAGCACTATAATTGGAGCTGTGAGTTTGCCAATAGCAATGGTCCTGAAATGCATTCCTGTTTCAAACTCCAAAACCACATGCCACTTCCACGATGGTTATGAGCCACTTCCCACTGGTCCTGACTTGGCT 2991 42.83 MSETIENYLRKNFDLESKSPSEEAQMRWRSAVSIVKNRRRRFRMVADLEKRAEAEEKRKKLQEKIRVALYVQKAALHFIDVSKLYINTHIHIFYCYVPAGKRGDYKLSTEVREAGFGVEPDALASMVQTHNTKSLEHYGGVGGLARELNVSLKDGIVTSEIPSRQNIYGINRYVEKPSRGFWMFVWEALHDLTLVILLISAVVSIGVGNATEGWPKGMYDGLGIIMSIFLVVIVTAISDYNQSLQFKDLEKQKKNIIIQVTRDGCRQKVSIYDLVVGDIVHLSIGDQVPADGILVSGYSLSLDESSLSGESEPVNVDDNRPFLLAGTKVQDGSGKMLVSSVGMRTEWGRLMVTLSEGGDDETPLQVKLNGVATIIGKIGLVFAVLTFIVLISRYFVSKALHNQIGHWSSKDASMLLNYFAIAVIIIVVAVPEGLPLAVTLSLAFAMKRLMKDKALVRHLSACETMGSATCICTDKTGTLTTNHMVVDKMWICEETRTIKNSHDETALKNSVDETVYNILVQSIFQNTSSEVVKGKDGKNTILGTPTETALLEFGLLLGGAFGTLNDEYKIVKVEPFNSNRKKMSVLVALPGGGFRAFCKGASEIILSMCDKVLSSNGEALPLSDEKRTNISNIINSFANDALRTLCIAYKNIEGFSAPEKIPDDDFTLIAVVGIKDPVRPGVKEAVQACLAAGITVRMVTGDNINTAKAIAKECGILTEGGLAIEGPEFRNKSQDEMEKLIPKLQVMARSSPLDKHTLVGQLRKTFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVVIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALMLNFISACVSALATEPPNEGLMQRKPIGRNVNIITGTMWRNIIGQSIYQITVLLILRFEGKRLLNLTGMFGSWVFIGVMASTVGFQIIIVEFLGTFAETVGLSWKLWVMSTIIGAVSLPIAMVLKCIPVSNSKTTCHFHDGYEPLPTGPDLA 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10096639 10105920 + Lsi09G008680.1 Lsi09g00868 670481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00868 997 Coils Coil 44 71 - -
Lsi09g00868 997 Pfam Cation transporter/ATPase, N-terminus 136 204 IPR004014 -
Lsi09g00868 997 Gene3D - 901 979 - -
Lsi09g00868 997 SUPERFAMILY HAD-like 471 849 IPR036412 -
Lsi09g00868 997 Gene3D - 20 81 - -
Lsi09g00868 997 Gene3D - 469 818 IPR023214 -
Lsi09g00868 997 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 478 682 IPR023299 GO:0000166
Lsi09g00868 997 SUPERFAMILY Calcium ATPase, transmembrane domain M 136 975 IPR023298 -
Lsi09g00868 997 Gene3D - 482 677 IPR023299 GO:0000166
Lsi09g00868 997 PRINTS P-type cation-transporting ATPase superfamily signature 692 702 - -
Lsi09g00868 997 PRINTS P-type cation-transporting ATPase superfamily signature 797 809 - -
Lsi09g00868 997 PRINTS P-type cation-transporting ATPase superfamily signature 472 486 - -
Lsi09g00868 997 PRINTS P-type cation-transporting ATPase superfamily signature 303 317 - -
Lsi09g00868 997 PRINTS P-type cation-transporting ATPase superfamily signature 670 681 - -
Lsi09g00868 997 PRINTS P-type cation-transporting ATPase superfamily signature 773 792 - -
Lsi09g00868 997 Pfam haloacid dehalogenase-like hydrolase 470 787 - -
Lsi09g00868 997 SFLD C1.7: P-type atpase like 454 825 - -
Lsi09g00868 997 PANTHER CALCIUM-TRANSPORTING ATPASE 7 855 - -
Lsi09g00868 997 PANTHER CALCIUM-TRANSPORTING ATPASE 912 981 - -
Lsi09g00868 997 PANTHER CALCIUM-TRANSPORTING ATPASE 856 913 - -
Lsi09g00868 997 Gene3D - 187 855 - -
Lsi09g00868 997 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 569 718 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi09g00868 997 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 743 860 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi09g00868 997 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 224 536 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi09g00868 997 PRINTS H+-transporting ATPase (proton pump) signature 773 789 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi09g00868 997 PRINTS H+-transporting ATPase (proton pump) signature 630 648 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi09g00868 997 PRINTS H+-transporting ATPase (proton pump) signature 805 830 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi09g00868 997 PANTHER CATION TRANSPORTING ATPASE 7 855 - -
Lsi09g00868 997 PANTHER CATION TRANSPORTING ATPASE 856 913 - -
Lsi09g00868 997 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 128 855 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lsi09g00868 997 Gene3D - 155 355 - -
Lsi09g00868 997 Pfam E1-E2 ATPase 258 451 - -
Lsi09g00868 997 SUPERFAMILY Calcium ATPase, transduction domain A 257 351 IPR008250 -
Lsi09g00868 997 PANTHER CATION TRANSPORTING ATPASE 912 981 - -
Lsi09g00868 997 Pfam Cation transporting ATPase, C-terminus 847 901 IPR006068 -
Lsi09g00868 997 Pfam Cation transporting ATPase, C-terminus 893 971 IPR006068 -
Lsi09g00868 997 SMART Cation_ATPase_N_a_2 135 209 IPR004014 -
Lsi09g00868 997 Pfam Ca2+-ATPase N terminal autoinhibitory domain 10 53 IPR024750 GO:0005516
Lsi09g00868 997 SFLD p-type atpase 454 825 IPR044492 -
Lsi09g00868 997 ProSitePatterns E1-E2 ATPases phosphorylation site. 474 480 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00892 Lsi-Chr1:7182041 Lsi09g00868 Lsi-Chr9:10096639 0 dispersed
Lsi03g01551 Lsi-Chr3:26477706 Lsi09g00868 Lsi-Chr9:10096639 0 dispersed
Lsi09g00868 Lsi-Chr9:10096639 Lsi11g00805 Lsi-Chr11:9824443 0 dispersed
Lsi09g00868 Lsi-Chr9:10096639 Lsi04g01488 Lsi-Chr4:22556570 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00868 K01537 - csv:101203529 1729.15