Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00869 ATGTCTCTTATAATCAGATATGTTGATATATCATCTAGTCTTATTACTATTGAGGAGTCCTTTTTAAGATTTTTGAAAGTGAATGATACCACAGATCAAGGACTTTTTAATGTTTTACAAACGGAATCGAAAGATCTTGGTCTTGACATAGATGATAGCCGTGTTGAGAGTGTTAAAGCTATAAGAAAACAAATGCCTGAAATACGTCAAGATTTACTTCAAGTGACCGAAATTAGTGATAATGATTTCAAAATGCAAAGTGAAGCTAAATCTTTGGCAACAAATGAGCTTGGTGATTATGAGTTTTTGGCGTTCAATATTCCTAATCTCCGTGTTGGAACGCTCGATTCGCTCCTTTCACTCAGCGATGATCTTCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAAGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCTGTTGATTCGTATCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCAACAATGTCGCCTCTTAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCCAAGATTGAGGATGATCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAACAGGAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTCGTGATTGTTCCCAAGTACTCTCAGAAAGAGTGGCTGTCTAGCTATGAAACACTGACTGGCTATGTGGTTCCCAGGTCTTCGAAGAAGTTATACGAGGATAATGAATATGCCCTTTTCACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGACTTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTCTGTGCCGTACGTGTCTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGTATATATCTTGCATTTGCTCCCTGGTTTCTGCCAAACATTTCCTCTTTCGAGTTTCGACAGTGCTGATTCTGTCAGTGATTTGCAGGCATCTGTTTTGGCACCTTCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTACCAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGCTGGTCTTGGAGGAGATTCTGATGCATACCCATATGTCTCCTTCACAATCAATCTTGCTTAA 1416 41.1 MSLIIRYVDISSSLITIEESFLRFLKVNDTTDQGLFNVLQTESKDLGLDIDDSRVESVKAIRKQMPEIRQDLLQVTEISDNDFKMQSEAKSLATNELGDYEFLAFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELEKVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTGYVVPRSSKKLYEDNEYALFTVTLFSRVADNFKTSAREKGFQIRDFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLVYILHLLPGFCQTFPLSSFDSADSVSDLQASVLAPSVKSEKKVRSILEGLCDSTNSTYWKTEDEVGGGMAGLGGDSDAYPYVSFTINLA 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10110345 10118376 - Lsi09G008690.1 Lsi09g00869 670482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00869 471 Pfam V-ATPase subunit C 98 387 IPR004907 GO:0033180|GO:0046961|GO:1902600
Lsi09g00869 471 Gene3D - 229 317 - -
Lsi09g00869 471 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 102 386 IPR004907 GO:0033180|GO:0046961|GO:1902600
Lsi09g00869 471 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 411 471 IPR004907 GO:0033180|GO:0046961|GO:1902600
Lsi09g00869 471 CDD V-ATPase_C 105 468 IPR004907 GO:0033180|GO:0046961|GO:1902600
Lsi09g00869 471 Gene3D - 107 378 - -
Lsi09g00869 471 SUPERFAMILY Vacuolar ATP synthase subunit C 410 470 IPR036132 GO:0015078|GO:0033180|GO:1902600
Lsi09g00869 471 Gene3D Vacuolar atp synthase subunit c; domain 1 98 387 - -
Lsi09g00869 471 SUPERFAMILY Vacuolar ATP synthase subunit C 101 388 IPR036132 GO:0015078|GO:0033180|GO:1902600
Lsi09g00869 471 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 102 386 - -
Lsi09g00869 471 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 411 471 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00869 K02148 - csv:101221574 617.076