Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00876 ATGAAAAGACAGCCAAAACGACACCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGAGATTCTGTACTTTTTATATGGAACGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTATCAAGTGATAGCATGCACATTGGACTCCTTGCTGCCGCAGCTCATGCTGCTGCAACGAATAGCTGTTTCACAGTGTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAGACTGAAGAGTCAAGTGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTTGATCCTGTTCGCTGGCCGAATTCTCATTGGCGTTCTGTCAAGATTGTCAACTTTGCACCATGGCTATTGTGTGAGTGGTCTGAAAACCTGATTGCTGTGGTAGGGTGGGATGAGTCAACAGCTGGGGAGAGGCAGCCAAGAGTATCGTTGTGGGAAATTGAGCCTTTGACTACATTTCCTATGTATCCGTCTCTGTTTCCGCTTAGACTGAAACGTCCATGGCATCCTGGAGTCTCTTCTGTCCATGATAACAGAGATGATGCATCTAATGGCTTAATGTGGGTTCGGGGAGGAGTCGGGGAACAAGGTCTACACTCACTGAATTTGCAATCTGTGGGCTCCCTGCCCTGGTTGCAGCAGAGACTTGATTCTTCCATGTTTGGAAATGATCATAATCAACAGTATCAAGCCATGTTGGCTGCTGGAATGCCAAACATTGGAGGTGTTGATATGCTGAGACAGCAAATTATGCATCTTCAACAACCTTTCCAATATATTCAACAGGCAGGCTTCCATAACTCTCTGTTGCAGATGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAATTGGTTCAACAATCTATGCCTCAGAATATCCTTCAGGCACCAAGCCAAGTTATGGCAGAAAATCTACCTCAACACATTCTCCAGCAAACTCTACATAACCAACCTGAGGATCTGCCAAACCAGCAACAGCATACTTATCATGATACCATTCAGGTTCAAAGCAATCAATTTCATCAGGGTGGGCATTCAAATGTGCCATCACCCACATTTCCCAGAACAGACCTTATGGATTCCAACACAAATTACTCGGAATCCATTACCTCTAGAAGAAATATACTTGCTTCATCATGTGCTGAAGGGACGGGAAATCTTTCCAATATCTACAGAAGTGGGCAGTCAATCCTAACCGAGCACTTACCTCAACAATCTCCTGTTTCTAAGAATGCTCATTCACAGGTTGATGCTCACCCGAACTCAATGTCATTTCCACCATTTTCTGGTAGAGACTCAATTTTGGAGCTGGGAAACTGTAATTCAGATTCTCCAAGTCCTACACTTTTTGGTGTAAATATTGATTCATCTGGACTTCTACTTCCCTCTAATGTGCCCACTTACGCTTCTCCATCAATTGGTCCTGATTCATCCTCAATGCCCCTGGGAGATTCTGGATTTCAGAATTCTCTGTACAGTTGTGTCCAAGACTCTTCTGAGTTGTTGCACAACTCAGGGCAAGTTGATCCATCGAATCCAACTCGAACATTTGTGAAGGTTTACAAATCCGGATCTGTTGGGCGCTCACTAGACATCTCCCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGAATAGAGGGACAGTTGGAAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTCAATAATGTCGGGTATATCAAGATACTTTCTCCCCAGGACTTTCAGAAACTAGGGGAACAGGCAATCGAGTCCTTCAACCCTATCGTTGGTCAGCGACTTACCAGTGGTGGCAATGAAGCTGGAAATGTTTCGGGACTACCGTCTGTTGGTTCGCTAGAATATTGA 2067 45.09 MKRQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKIVNFAPWLLCEWSENLIAVVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWVRGGVGEQGLHSLNLQSVGSLPWLQQRLDSSMFGNDHNQQYQAMLAAGMPNIGGVDMLRQQIMHLQQPFQYIQQAGFHNSLLQMQQQQQQQQQQQQQLVQQSMPQNILQAPSQVMAENLPQHILQQTLHNQPEDLPNQQQHTYHDTIQVQSNQFHQGGHSNVPSPTFPRTDLMDSNTNYSESITSRRNILASSCAEGTGNLSNIYRSGQSILTEHLPQQSPVSKNAHSQVDAHPNSMSFPPFSGRDSILELGNCNSDSPSPTLFGVNIDSSGLLLPSNVPTYASPSIGPDSSSMPLGDSGFQNSLYSCVQDSSELLHNSGQVDPSNPTRTFVKVYKSGSVGRSLDISRFSSYQELREELAQMFGIEGQLEDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVGYIKILSPQDFQKLGEQAIESFNPIVGQRLTSGGNEAGNVSGLPSVGSLEY 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10198003 10213139 - Lsi09G008760.1 Lsi09g00876 670489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00876 688 ProSiteProfiles PB1 domain profile. 563 647 IPR000270 GO:0005515
Lsi09g00876 688 Pfam Auxin response factor 71 154 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi09g00876 688 Coils Coil 315 335 - -
Lsi09g00876 688 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 663 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi09g00876 688 ProSiteProfiles B3 DNA-binding domain profile. 1 47 IPR003340 GO:0003677
Lsi09g00876 688 MobiDBLite consensus disorder prediction 387 410 - -
Lsi09g00876 688 PANTHER AUXIN RESPONSE FACTOR 8 3 663 - -
Lsi09g00876 688 Gene3D - 109 200 - -
Lsi09g00876 688 Pfam AUX/IAA family 560 649 IPR033389 -
Lsi09g00876 688 Pfam B3 DNA binding domain 2 46 IPR003340 GO:0003677
Lsi09g00876 688 SUPERFAMILY DNA-binding pseudobarrel domain 4 74 IPR015300 -
Lsi09g00876 688 Gene3D - 1 47 IPR015300 -
Lsi09g00876 688 Gene3D - 559 652 - -
Lsi09g00876 688 SUPERFAMILY CAD & PB1 domains 555 637 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00922 Lsi-Chr2:8889744 Lsi09g00876 Lsi-Chr9:10198003 0 dispersed
Lsi09g00876 Lsi-Chr9:10198003 Lsi04g01726 Lsi-Chr4:24579151 2.88E-31 dispersed
Lsi09g00876 Lsi-Chr9:10198003 Lsi01g00116 Lsi-Chr1:1225345 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25908 PF02309 AUX_IAA 2.20E-08 CL0072 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00876 - - csv:101208098 1263.06