Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00877 ATGATCGGAAACCACCACTCATTAGTAACTTTCGCCAACTGCCACCAATTGTCAGTGATCGATACTGTTGATAACGATCACTTCGACAATGGTCAATGGTCACCGATTGAAACTGGAGAATCGTTGACTGGCGATTGGCATGGTTGGTATCATGATCGGAGATTGGCGATCGAGACTAGTGACAACGATCACTCCGACAATGTCAGTCCGATTGTGGTACCGGCTTACTCTAAAATTGTTTGTCAGTGGGGGTTTTTTTTGGGGTTTAATTCATCTCATCTTTCTCAGTTTCCCCACTTGATTGTTGTTCGCTTTCGTTGGTTTTTTTTGTTGTTTCTCTCTAGAGGGATCTACGGAGGAATCTTCTTAATGTTATCGGTTGAAAGTTATGAGTTTCAGGCAGGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCCACGACCAACAAAGAAGTTGATGGGCACATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGCCAACTTCACAACGTTACAATGCATGCAGATGTGGAAACGGATGAAGTATATGCCCAGATGACATTACAGCCATTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCAAGTAGACAGCCAACAAATTACTTTTGCAAGACGTTGACAGCAAGTGATACAAGCACCCATGGAGGATTTTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTTGAATGGAAGTTTAGGCATATTTTTCGAGGTCAGTCCCTTGATGTTCTGTCCATTTGA 1002 45.61 MIGNHHSLVTFANCHQLSVIDTVDNDHFDNGQWSPIETGESLTGDWHGWYHDRRLAIETSDNDHSDNVSPIVVPAYSKIVCQWGFFLGFNSSHLSQFPHLIVVRFRWFFLLFLSRGIYGGIFLMLSVESYEFQAGGKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQSLDVLSI 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10219872 10224824 - Lsi09G008770.1 Lsi09g00877 670490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00877 333 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 140 327 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi09g00877 333 SUPERFAMILY DNA-binding pseudobarrel domain 251 326 IPR015300 -
Lsi09g00877 333 CDD B3_DNA 266 327 IPR003340 GO:0003677
Lsi09g00877 333 Gene3D - 265 332 IPR015300 -
Lsi09g00877 333 PANTHER AUXIN RESPONSE FACTOR 8 140 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00877 Lsi-Chr9:10219872 Lsi02g00922 Lsi-Chr2:8889744 5.48E-101 dispersed
Lsi09g00877 Lsi-Chr9:10219872 Lsi01g00116 Lsi-Chr1:1225345 1.47E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00877 - - csv:101208098 392.504