Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00896 ATGTCAAAAGAAGAGGTTATAATTTTGGACTGTTTGCTCAGCCCATTTTGCAATAGGGTTAAGATTGCTTTGAATGAGAAGGGAGTGAGTTATGAGAGTAAAGAAGAGGATTTGTTTGGTTTTAAAGGTGGGAAAAGTGAGTTGTTGCTCAAATCTAACCCTATTTATAAGAAAGTGCCTATTCTCTTGCATAATGGTAAGCCATTGAATGAAAGTTCTATTATTGTCAACTATATTGACGAGACTTGGCCTTCTTCTTCCCCACTTCTTCCTTCTTCGCCCTACGAAAGAGCTCAAGCTCGGTTCTGGATTGACTACATCGACAAAAAGGTATTTGATGTGGGTTCCAAGATTTGGAAGAGCAATGGAGAAGAGCAAGAGGCAGCCAAGAAAGAGTTGATAGAGATTTTAAAGCAATTGGAGGAAGTTTTAGGGGACAAAGATTTCTTTGGAGGTGAAAAGTTTGGGATTGTGGATGTGATTGCAATCCCATTCACAAGTTGGTTCTATGCTTATGAGAAAGTTGGGAACTTCAAAGTGGAAGAACATTGCCCTAAATTCTCAGCTTGGGAAAAGAGATGTTTGCAAAAGGAAACTGTTGCAAGTGTTATCCCTTGCCCTGAGAAGATCTATCACTTTCTCACCTCCATGAGAAAGAACCTTGGGCTTGAATAG 675 39.7 MSKEEVIILDCLLSPFCNRVKIALNEKGVSYESKEEDLFGFKGGKSELLLKSNPIYKKVPILLHNGKPLNESSIIVNYIDETWPSSSPLLPSSPYERAQARFWIDYIDKKVFDVGSKIWKSNGEEQEAAKKELIEILKQLEEVLGDKDFFGGEKFGIVDVIAIPFTSWFYAYEKVGNFKVEEHCPKFSAWEKRCLQKETVASVIPCPEKIYHFLTSMRKNLGLE 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10669069 10670728 - Lsi09G008960.1 Lsi09g00896 670509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00896 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 87 IPR004045 -
Lsi09g00896 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 216 IPR045073 -
Lsi09g00896 224 SUPERFAMILY GST C-terminal domain-like 81 220 IPR036282 -
Lsi09g00896 224 Coils Coil 123 143 - -
Lsi09g00896 224 Pfam Glutathione S-transferase, N-terminal domain 7 81 IPR004045 -
Lsi09g00896 224 Pfam Glutathione S-transferase, C-terminal domain 122 197 IPR004046 -
Lsi09g00896 224 SUPERFAMILY Thioredoxin-like 12 111 IPR036249 -
Lsi09g00896 224 Gene3D Glutaredoxin 2 92 - -
Lsi09g00896 224 Gene3D - 93 224 - -
Lsi09g00896 224 CDD GST_N_Tau 6 83 - -
Lsi09g00896 224 SFLD Glutathione Transferase (cytosolic) 2 221 IPR040079 -
Lsi09g00896 224 SFLD Main.3: Omega- and Tau-like 2 221 IPR045073 -
Lsi09g00896 224 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 6 216 - -
Lsi09g00896 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 213 IPR010987 -
Lsi09g00896 224 CDD GST_C_Tau 95 217 IPR045074 GO:0004364|GO:0006749
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00839 Lsi-Chr7:9389835 Lsi09g00896 Lsi-Chr9:10669069 7.00E-64 dispersed
Lsi07g00840 Lsi-Chr7:9392594 Lsi09g00896 Lsi-Chr9:10669069 1.67E-85 dispersed
Lsi09g00896 Lsi-Chr9:10669069 Lsi01g01490 Lsi-Chr1:12986980 2.14E-50 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00896 K00799 - csv:101213628 420.239