Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00897 ATGTCGCCATCTCTTCCACTTCACTTCCTCTTCACTGTTGCAGCAGCTCTCACAGCTCCAGTCACCTCCCATTTCTCTTCTACAACCTCCTCGCCGTCGCCGGATTCCGCCCCGTCGCTCTCCGAGTGGAGATCTGCTCGTGCTACCTACTACGCCGCCTCCGACCCTCGGGATGCGGTGGGTGGAGCCTGTGGATATGGCGATTTAGTGAAGGCAGGCTATGGCATGGCGACGGTGGGACTCAGCGAGTCGCTATTTGAACGCGGACAGATCTGCGGTGCCTGCTTTCAGCTCCGGTGTGTGGAGGACCTCCGGTGGTGTATTCCTGGTACCTCTATCATTGTCACTGTTACTAATTTCTGTGCGCCTAATTATGGCTTCACGGCTGAGGGTGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTACTCCCTATTGAGGCGTTTGAGAAGATCGCTATCTGGAAGGCGGGAAACATGCCTGTTCAGTATCGGAGGATCAAATGCCGAAAGGAAGGGGGTATTCGATATACGGTTTCTGGGTACGGCATCTACCTCTCAGTGTTGATAAGTAATGTTGCAGGCGCTGGAGATGTGAGTGCTGTAAAGATCAAGGGGTCAAGAAGCGGTTGGCTTCCGATGGGTCGTAACTGGGGGCAAAACTGGCACATTAATGCTGATTTGAATCGTCAAGCCCTTTCCTTCGAAGTCACTAGCAGTGATGGAGTAACAATTACGTCCTACAATGTTGCTCCAAAGGATTGGAACTTTGGGCAGACTTTTGAAGGCAAGCAATTTGAATCTTGA 807 51.67 MSPSLPLHFLFTVAAALTAPVTSHFSSTTSSPSPDSAPSLSEWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSESLFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGIRYTVSGYGIYLSVLISNVAGAGDVSAVKIKGSRSGWLPMGRNWGQNWHINADLNRQALSFEVTSSDGVTITSYNVAPKDWNFGQTFEGKQFES 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10675872 10680876 - Lsi09G008970.1 Lsi09g00897 670510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00897 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 174 IPR007112 -
Lsi09g00897 268 PRINTS Expansin signature 132 149 IPR002963 GO:0009664
Lsi09g00897 268 PRINTS Expansin signature 173 185 IPR002963 GO:0009664
Lsi09g00897 268 PRINTS Expansin signature 73 87 IPR002963 GO:0009664
Lsi09g00897 268 PRINTS Expansin signature 185 206 IPR002963 GO:0009664
Lsi09g00897 268 PRINTS Expansin signature 220 241 IPR002963 GO:0009664
Lsi09g00897 268 PRINTS Expansin signature 113 123 IPR002963 GO:0009664
Lsi09g00897 268 PRINTS Expansin signature 149 162 IPR002963 GO:0009664
Lsi09g00897 268 PRINTS Expansin signature 249 265 IPR002963 GO:0009664
Lsi09g00897 268 PRINTS Expansin signature 100 111 IPR002963 GO:0009664
Lsi09g00897 268 PANTHER EXPANSIN-A13 24 267 - -
Lsi09g00897 268 PANTHER EXPANSIN-A15 24 267 IPR002963 GO:0009664
Lsi09g00897 268 SMART dpbb_1 78 164 IPR007112 -
Lsi09g00897 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 263 IPR007117 -
Lsi09g00897 268 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Lsi09g00897 268 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Lsi09g00897 268 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Lsi09g00897 268 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Lsi09g00897 268 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Lsi09g00897 268 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Lsi09g00897 268 SUPERFAMILY Barwin-like endoglucanases 42 192 IPR036908 -
Lsi09g00897 268 Pfam Expansin C-terminal domain 175 252 IPR007117 -
Lsi09g00897 268 Gene3D - 27 170 IPR036908 -
Lsi09g00897 268 SUPERFAMILY PHL pollen allergen 171 263 IPR036749 -
Lsi09g00897 268 Pfam Lytic transglycolase 79 164 IPR009009 -
Lsi09g00897 268 Gene3D - 175 266 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00897 Lsi-Chr9:10675872 Lsi04g00889 Lsi-Chr4:8841940 4.01E-87 dispersed
Lsi09g00897 Lsi-Chr9:10675872 Lsi10g01386 Lsi-Chr10:17970338 8.06E-91 transposed
Lsi09g00897 Lsi-Chr9:10675872 Lsi02g01353 Lsi-Chr2:18139244 1.12E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00897 - - csv:101206236 530.406