Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g00904 | ATGAAGAACCGATGTGTGAACATGATCGCTCATTTGTTCAATGCCCCATTGGGTGATGCTGAGACGGCAGTGGGAGTTGGAACAGTGGGATCGTCAGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAATGGCAGAACAGAAGGAAGGCTGAAGGCAAGCCCTATGACAACCCCAATATTGTCACTGGAGCTAATGTCCAGGGATACCAAAACGTGATGGAAAACTGCAAAGAAAACATGATAGTACTAAAGGAAGGACTCGAACAAACAGGACGGTTCAACATCGTGTCGAAGGACAATGGAGTTCCACTTGTGGCCTTCTCCTTGAAAGACAACACACGCCATACAGAGTTTGAGGTCTCAGAAATGCTGAGGAGATTCGGCTGGATTGTACCAGCTTACACCATGCCTCCTGATGCACAACACATAACAGTCCTTAGAGTAGTGATCCGAGAAGACTTTTCTCGCACGCTTGCTGAGCGTCTTGTGAAGGATATTGAGAAAACGATGCACGAGCTCGACAGCCTCCCGTCGAGGGCCGATATCAAGACGACGGTGGCTGGAGAAGAGACACAGAAGAACGATGTCGTGGTGGCAAAGAAGAGCGCACTCGAGACACAGAGGGAGATCACAACTGCTTGGAGGAAGTTTGTGATGGAAAAGAAGAAGACTAATGGAGTTTGTTAA | 693 | 48.05 | MKNRCVNMIAHLFNAPLGDAETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDNPNIVTGANVQGYQNVMENCKENMIVLKEGLEQTGRFNIVSKDNGVPLVAFSLKDNTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVKDIEKTMHELDSLPSRADIKTTVAGEETQKNDVVVAKKSALETQREITTAWRKFVMEKKKTNGVC | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 10924604 | 10932346 | + | Lsi09G009040.1 | Lsi09g00904 | 670517 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g00904 | 230 | PANTHER | GLUTAMATE DECARBOXYLASE | 2 | 69 | - | - | |
Lsi09g00904 | 230 | SUPERFAMILY | PLP-dependent transferases | 1 | 69 | IPR015424 | - | |
Lsi09g00904 | 230 | Gene3D | - | 1 | 69 | IPR015421 | GO:0003824 | |
Lsi09g00904 | 230 | Gene3D | - | 92 | 179 | - | - | |
Lsi09g00904 | 230 | PANTHER | GLUTAMATE DECARBOXYLASE | 69 | 230 | - | - | |
Lsi09g00904 | 230 | PANTHER | GLUTAMATE DECARBOXYLASE | 69 | 230 | IPR010107 | GO:0004351|GO:0006536|GO:0030170 | |
Lsi09g00904 | 230 | PANTHER | GLUTAMATE DECARBOXYLASE | 2 | 69 | IPR010107 | GO:0004351|GO:0006536|GO:0030170 | |
Lsi09g00904 | 230 | Pfam | Pyridoxal-dependent decarboxylase conserved domain | 1 | 69 | IPR002129 | GO:0016830|GO:0019752|GO:0030170 | |
Lsi09g00904 | 230 | SUPERFAMILY | PLP-dependent transferases | 68 | 175 | IPR015424 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi09g00731 | Lsi-Chr9:8415330 | Lsi09g00904 | Lsi-Chr9:10924604 | 1.89E-19 | dispersed | |
Lsi09g00732 | Lsi-Chr9:8415685 | Lsi09g00904 | Lsi-Chr9:10924604 | 4.35E-14 | dispersed | |
Lsi09g00733 | Lsi-Chr9:8445567 | Lsi09g00904 | Lsi-Chr9:10924604 | 6.94E-33 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g00904 | K01580 | - | csv:101216119 | 316.235 |