Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00904 ATGAAGAACCGATGTGTGAACATGATCGCTCATTTGTTCAATGCCCCATTGGGTGATGCTGAGACGGCAGTGGGAGTTGGAACAGTGGGATCGTCAGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAATGGCAGAACAGAAGGAAGGCTGAAGGCAAGCCCTATGACAACCCCAATATTGTCACTGGAGCTAATGTCCAGGGATACCAAAACGTGATGGAAAACTGCAAAGAAAACATGATAGTACTAAAGGAAGGACTCGAACAAACAGGACGGTTCAACATCGTGTCGAAGGACAATGGAGTTCCACTTGTGGCCTTCTCCTTGAAAGACAACACACGCCATACAGAGTTTGAGGTCTCAGAAATGCTGAGGAGATTCGGCTGGATTGTACCAGCTTACACCATGCCTCCTGATGCACAACACATAACAGTCCTTAGAGTAGTGATCCGAGAAGACTTTTCTCGCACGCTTGCTGAGCGTCTTGTGAAGGATATTGAGAAAACGATGCACGAGCTCGACAGCCTCCCGTCGAGGGCCGATATCAAGACGACGGTGGCTGGAGAAGAGACACAGAAGAACGATGTCGTGGTGGCAAAGAAGAGCGCACTCGAGACACAGAGGGAGATCACAACTGCTTGGAGGAAGTTTGTGATGGAAAAGAAGAAGACTAATGGAGTTTGTTAA 693 48.05 MKNRCVNMIAHLFNAPLGDAETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDNPNIVTGANVQGYQNVMENCKENMIVLKEGLEQTGRFNIVSKDNGVPLVAFSLKDNTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVKDIEKTMHELDSLPSRADIKTTVAGEETQKNDVVVAKKSALETQREITTAWRKFVMEKKKTNGVC 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10924604 10932346 + Lsi09G009040.1 Lsi09g00904 670517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00904 230 PANTHER GLUTAMATE DECARBOXYLASE 2 69 - -
Lsi09g00904 230 SUPERFAMILY PLP-dependent transferases 1 69 IPR015424 -
Lsi09g00904 230 Gene3D - 1 69 IPR015421 GO:0003824
Lsi09g00904 230 Gene3D - 92 179 - -
Lsi09g00904 230 PANTHER GLUTAMATE DECARBOXYLASE 69 230 - -
Lsi09g00904 230 PANTHER GLUTAMATE DECARBOXYLASE 69 230 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lsi09g00904 230 PANTHER GLUTAMATE DECARBOXYLASE 2 69 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lsi09g00904 230 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 69 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lsi09g00904 230 SUPERFAMILY PLP-dependent transferases 68 175 IPR015424 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00731 Lsi-Chr9:8415330 Lsi09g00904 Lsi-Chr9:10924604 1.89E-19 dispersed
Lsi09g00732 Lsi-Chr9:8415685 Lsi09g00904 Lsi-Chr9:10924604 4.35E-14 dispersed
Lsi09g00733 Lsi-Chr9:8445567 Lsi09g00904 Lsi-Chr9:10924604 6.94E-33 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00904 K01580 - csv:101216119 316.235