Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00907 ATGGCGTGCCGGTTTCTCCTCCGGTTGTGTTTTTCATCTATGGTGTTTCTTGCTTTGATCTTCTTTCCTGCAGGAGAGGCACAGCCCGATCTTGCGTCGGACACGGCGGCGCTGGTCGCGCTTCAGAAGGCCATGGGCGTTTTGAGCCGGACTCGCTATTGGAACCTCTCCGAGAAGACTCCATGTTTGTGGCTTGGCGTTACTTGCGGCGGCGGGAGGGTTACTGAACTGCGGCTTCCCGGCGTTGGTCTCGTCGGTCAACTTCCTTTAGGGCTTGGAAATTTGACTCAACTTGAAACCCTATCACTTCGCTCTAACATGCTTTCAGGTTCTATTCCGTCTGATTTTGCAAACCTCCGCTTCCTCCGTAACCTCTACTTGCAATGGAACTCGTTTTCCGGCGAGATTCCTCTGGTTCTGTTCAGTATTCAGAGTCTTGTTCGCCTGAATTTGGCGCACAACAAGTTCGTCGGTCCGATTTCATTAGGTTTCAATAACCTGACGAACTTACAGGTTCTCAATTTGGAAGAGAATCAACTCGATGGATTTATTCCTGATTTGAACATTCCCTCACTCAACGCTCTCAATGTTTCTTTCAATCGTCTCAACGGCTCAATCCCTTCGCGATTTTCCAATCAACCAGCCAGTGCCTTCGACGGCAACTCGCTCTGCGGGAAGCCACTGAGCCCTTGCAATGACGAGGAGAAGAAATTATCCGCTGGAGCAATCGCCGGAATCGTTATCGGAAGTTTGGTTGTATTCTTGATCATCGTTCTGATTTTGATCTTTCTGTGCCGAAAGACGATCAGGATTAATCGGCCGAGTGATTCTCAGACGATGGCGACGACCTCCGGTAGATTGTCGTCAGAGGTTGAGAATGCAGTTGGTGGAAATAGAGGAGCTGGGAATGAGAGGAATGAGAGGAATTTGGTGTTCTGTAGGAAAGGAGAAAGTGAGTTTGATTTGGAGGAACTGTTGAAAGCTTCTGCAGAGGTGTTGGGGAAAGGGAGTTTTGGGTCAACTTACAAGGCAGCTCTGGATGTGGGGATAACTGTGGTGGTTAAGAGGTTGAGAGATGTCAAAGTTTCAGAGGAGGAATTCAAGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAGAACTTAGTTCCTATTAAGGGATATTATTATGGCAGAGATGAGAAGCTTCTGCTGTGTGATCATGTCTCCACGGGAAGCTTATCTGTACATTTACATGGCAATAAAGATCCTAGTAGTACTCCATTGAGATGGGAAGCAAGGGCTGGCATTGCGCTTGCAGCTGCTCGGGGGATTACGTATCTACATTCTCGACGACCTCCGACCTCTCATGGCAATATAAAGTCTTCAAACATTCTCCTCAACAGATCCCATACAGCTTGTGTCTCTGACTTTGGTCTCATTCAGATTGCAAGTCCTACATCCACTCCAAACCATGTTGCAACCTACCGCGCCCCTGAAGTCACCGATCCTCGAAAAGTATCCTTGAAAGCAGATGTTTATAGTTTTGGTGTGGTAATTCTAGAGCTTCTAACAGGGAAGGCTCCGAACTCGGCAATGCTCAATGACGATGGCGTAGACCTCCCACGATGGGTGCAATCAAAGATCGAAGAGAAGAAAACTGCTGAAGTATTTGATGAGGAGCTGTTAGAATACAAGAATGGCTTGGATGAAATGGTTCAACTTCTGCATCTTGCCATGTTATGTACAGCACCACACCCGGATAGTCGACCTACGATGGCGAAGGTGACGAGTCGAATCGATGAAATATATCATTCGATCTTACTGAAAGAACAAGATACGAGCAACGACAAGTTCTATGATGTGGACAGTACTGTTTCTCAGCAATTTTACTCAGCTGATTCAATCATGGTTCCTCTTCCACCTTCAATCTAG 1914 46.97 MACRFLLRLCFSSMVFLALIFFPAGEAQPDLASDTAALVALQKAMGVLSRTRYWNLSEKTPCLWLGVTCGGGRVTELRLPGVGLVGQLPLGLGNLTQLETLSLRSNMLSGSIPSDFANLRFLRNLYLQWNSFSGEIPLVLFSIQSLVRLNLAHNKFVGPISLGFNNLTNLQVLNLEENQLDGFIPDLNIPSLNALNVSFNRLNGSIPSRFSNQPASAFDGNSLCGKPLSPCNDEEKKLSAGAIAGIVIGSLVVFLIIVLILIFLCRKTIRINRPSDSQTMATTSGRLSSEVENAVGGNRGAGNERNERNLVFCRKGESEFDLEELLKASAEVLGKGSFGSTYKAALDVGITVVVKRLRDVKVSEEEFKEKIESLGMMNHQNLVPIKGYYYGRDEKLLLCDHVSTGSLSVHLHGNKDPSSTPLRWEARAGIALAAARGITYLHSRRPPTSHGNIKSSNILLNRSHTACVSDFGLIQIASPTSTPNHVATYRAPEVTDPRKVSLKADVYSFGVVILELLTGKAPNSAMLNDDGVDLPRWVQSKIEEKKTAEVFDEELLEYKNGLDEMVQLLHLAMLCTAPHPDSRPTMAKVTSRIDEIYHSILLKEQDTSNDKFYDVDSTVSQQFYSADSIMVPLPPSI 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11033095 11035579 + Lsi09G009070.1 Lsi09g00907 670520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00907 637 MobiDBLite consensus disorder prediction 276 291 - -
Lsi09g00907 637 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Lsi09g00907 637 ProSiteProfiles Protein kinase domain profile. 327 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00907 637 MobiDBLite consensus disorder prediction 276 302 - -
Lsi09g00907 637 Pfam Protein tyrosine and serine/threonine kinase 331 592 IPR001245 GO:0004672|GO:0006468
Lsi09g00907 637 Gene3D Ribonuclease Inhibitor 34 143 IPR032675 -
Lsi09g00907 637 Gene3D Phosphorylase Kinase; domain 1 297 401 - -
Lsi09g00907 637 PANTHER OS05G0588300 PROTEIN 13 597 - -
Lsi09g00907 637 Gene3D Transferase(Phosphotransferase) domain 1 402 607 - -
Lsi09g00907 637 Gene3D Ribonuclease Inhibitor 144 231 IPR032675 -
Lsi09g00907 637 SUPERFAMILY L domain-like 46 212 - -
Lsi09g00907 637 SUPERFAMILY Protein kinase-like (PK-like) 331 591 IPR011009 -
Lsi09g00907 637 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Lsi09g00907 637 PANTHER LRR RECEPTOR-LIKE KINASE 13 597 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00615 Lsi-Chr2:5441711 Lsi09g00907 Lsi-Chr9:11033095 5.71E-09 dispersed
Lsi05g00350 Lsi-Chr5:4467542 Lsi09g00907 Lsi-Chr9:11033095 0 dispersed
Lsi09g00907 Lsi-Chr9:11033095 Lsi06g00909 Lsi-Chr6:18797364 3.18E-160 dispersed
Lsi09g00907 Lsi-Chr9:11033095 Lsi11g00286 Lsi-Chr11:2954323 6.37E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83897 PF07714 PK_Tyr_Ser-Thr 1.40E-33 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00907 - - csv:101206516 996.882