Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00909 ATGGAGAACAACCAACCTGAGAATCAACATCCTCTTCACAAAACCACTAGCTTCAACAACAACAATCATGCCCCCAAATTGGATGCTGATGATGCCAATCTCACCGTTTCTGTTCCTGATCCTGATGCTCTTGTTCTACAAACCGATGCTGCTGCTCTAAAATCTCTTGATAATTTGGAGGATCAGGGTCAGGATCAGAATCAAAATCAGGATCAGGATCAGGAGCAGGAGGAGAAGGAGGAGACGAAGGAGGAGGAGGAAGAACAAAAGAAGGAGGGGGAGGAAAAGACGGAGGAGGAAGAATCCAAGGACGAACCCGATCATCATTACAATCTCCATACGATTCTTGAAGATGTTGATCAATTTCTCTCAACTCCCCACGGTTCTCGTAATCGAGAGGAAGATTCTGTTGTTGAAATTCCGCAGTTCATCGACAAATTCTTGGATCTCGTGGATGCGAAGATTGAGCAATACAATAACGAGGAATCGAATGCGAAGGAGAAAGAGTGTAGAGTACCGGAGGACGAGTCGACGTTTCTCGAAGCGGTTGATCGGATATCCAAGCTGAAAACTGCAATTCACGAAATGAAATTGGAAGAGGAGAAGAATTCGTTGATCAATCGCATCGGGAGCACTCAACAGCAAGCGATTTCTTATTTGGAAGAAGAGTTCAGATTCTTTCTCGAGGAATCTAAAAATAGCGATACGGATCCTGCTGCGGATACGAAGGGGAAACAAGAACATGATCGTTCTGCATCATCGGACGCTGAATCCGATCAGTTCCAGTTTCCAGGTTACTCCGACGAGATCGTAAACTATTTGAACAAAATCGCTAAGCAAATGATTTCCGGTGGATACGAATCGGAATGCTGCCAAGTCTACATGGTTGCGAGAAGAAACATATTCGAAAAAGAAGCCTTGCTGAAGCTCGGATTCGAGAAACACAGCATCGATGATATCCAGAAGATGAATTGGGAATCAATGGAGAGGGAGATCGCTACATGGATTAAAACCTTCAAACAATGCGCCACCATTTTATTCTCCGGCGAACGGAAACTCGCCGAATCTGTATTTTCAGCGTATCCTCCAATTTCCGCCAGTCTGTTTAGCAATCTAACTCGCGGCATTGTGATTCAACTCTTAAATTTCTCAGAAGGTGTAGCAATGACGAAACGCTCCGCCGAGAAATTGTTCAAGCTTCTTGATATGTACGAAGCTCTTCGCGACATGGTCCCAAAAATGGAAACATTATTTCCAGAAGAATCCGCCAACGAACTCAAAACAGAAACAACAACCGCTCGAACTCGTCTGGGCGAAGCGGCGATTTGCATATTTTGCGATCTCGAAAACTCAATCAAAGCAGACACCGGAAAAACTCCGGTACCAGGCGGCGCCGTACATCCATTAACTCGATACACCATAAACTACTTGAAATACGCTTGCGAGTACAGAAACACACTGGAACAGATTTTCAAAGAACACTCAAAGATCGAACGAGCCGATTCAACAAGTAGACCACATTTCGAAGGCGAACAAGCACCGAGTTACAACTCTAGCGTTGATAATCAATCACTATTCTCCGTGGAACTGACGCGAGTAATGGAGCTTCTGGACTCAAATCTGGAAGGAAAAGCAAAGCTATACAGAGACATAGCACTGAGTTCGATTTTCATGATGAACAACGGACGATACATCTTGCAGAAGATCAAAGGATCTGCAGATATCCATGAACTAGTAGGCGATACGTGGTACAGGAAGAGATCTTCGGATTTGCGTCAGTATCACAAGAGTTACCAGAGAGAAACGTGGGGGAAATTGTTAGGTTGTTTGAATCACGAGGGATTAACGGTGCACGGGAAAGTGGTAAAGCCAGTGCTGAAGGAGAGGTTTAAAGGATTCAACGCGCTGTTCGAAGAGATTCACAAAACACAGAGCTCGTGGATCATAAGCGACGAGCAGCTTCAATCGGAGCTGCGAGTATCGATATCGGCGGTGATGATTCCGGCGTATAGATCATTCTTAGCGAGGTTTTCGCAGTATTTGGATCCGGGGAGACAAACAGAGAAATATATAAAGTTGCAGCCTGAAGATATAGAAACTTACATAGATGATCTATTTGATGGAAATCCAAGCTCCATGGCAAGAAGGAGAACATAA 2157 44.46 MENNQPENQHPLHKTTSFNNNNHAPKLDADDANLTVSVPDPDALVLQTDAAALKSLDNLEDQGQDQNQNQDQDQEQEEKEETKEEEEEQKKEGEEKTEEEESKDEPDHHYNLHTILEDVDQFLSTPHGSRNREEDSVVEIPQFIDKFLDLVDAKIEQYNNEESNAKEKECRVPEDESTFLEAVDRISKLKTAIHEMKLEEEKNSLINRIGSTQQQAISYLEEEFRFFLEESKNSDTDPAADTKGKQEHDRSASSDAESDQFQFPGYSDEIVNYLNKIAKQMISGGYESECCQVYMVARRNIFEKEALLKLGFEKHSIDDIQKMNWESMEREIATWIKTFKQCATILFSGERKLAESVFSAYPPISASLFSNLTRGIVIQLLNFSEGVAMTKRSAEKLFKLLDMYEALRDMVPKMETLFPEESANELKTETTTARTRLGEAAICIFCDLENSIKADTGKTPVPGGAVHPLTRYTINYLKYACEYRNTLEQIFKEHSKIERADSTSRPHFEGEQAPSYNSSVDNQSLFSVELTRVMELLDSNLEGKAKLYRDIALSSIFMMNNGRYILQKIKGSADIHELVGDTWYRKRSSDLRQYHKSYQRETWGKLLGCLNHEGLTVHGKVVKPVLKERFKGFNALFEEIHKTQSSWIISDEQLQSELRVSISAVMIPAYRSFLARFSQYLDPGRQTEKYIKLQPEDIETYIDDLFDGNPSSMARRRT 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11087301 11089457 + Lsi09G009090.1 Lsi09g00909 670522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00909 718 Gene3D Exocyst complex component Exo70 154 716 - -
Lsi09g00909 718 Pfam Exo70 exocyst complex subunit 334 704 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lsi09g00909 718 Coils Coil 56 103 - -
Lsi09g00909 718 MobiDBLite consensus disorder prediction 231 255 - -
Lsi09g00909 718 Coils Coil 195 215 - -
Lsi09g00909 718 Coils Coil 148 171 - -
Lsi09g00909 718 MobiDBLite consensus disorder prediction 231 262 - -
Lsi09g00909 718 MobiDBLite consensus disorder prediction 1 36 - -
Lsi09g00909 718 MobiDBLite consensus disorder prediction 1 26 - -
Lsi09g00909 718 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 97 717 - -
Lsi09g00909 718 PANTHER EXOCYST COMPLEX PROTEIN EXO70 97 717 IPR004140 GO:0000145|GO:0006887
Lsi09g00909 718 MobiDBLite consensus disorder prediction 55 136 - -
Lsi09g00909 718 SUPERFAMILY Cullin repeat-like 174 707 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00009 Lsi-Chr7:125965 Lsi09g00909 Lsi-Chr9:11087301 0 dispersed
Lsi09g00909 Lsi-Chr9:11087301 Lsi07g00994 Lsi-Chr7:13795587 3.02E-80 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00909 K07195 - csv:101206040 1154.04