Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00909 ATGGAGAACAACCAACCTGAGAATCAACATCCTCTTCACAAAACCACTAGCTTCAACAACAACAATCATGCCCCCAAATTGGATGCTGATGATGCCAATCTCACCGTTTCTGTTCCTGATCCTGATGCTCTTGTTCTACAAACCGATGCTGCTGCTCTAAAATCTCTTGATAATTTGGAGGATCAGGGTCAGGATCAGAATCAAAATCAGGATCAGGATCAGGAGCAGGAGGAGAAGGAGGAGACGAAGGAGGAGGAGGAAGAACAAAAGAAGGAGGGGGAGGAAAAGACGGAGGAGGAAGAATCCAAGGACGAACCCGATCATCATTACAATCTCCATACGATTCTTGAAGATGTTGATCAATTTCTCTCAACTCCCCACGGTTCTCGTAATCGAGAGGAAGATTCTGTTGTTGAAATTCCGCAGTTCATCGACAAATTCTTGGATCTCGTGGATGCGAAGATTGAGCAATACAATAACGAGGAATCGAATGCGAAGGAGAAAGAGTGTAGAGTACCGGAGGACGAGTCGACGTTTCTCGAAGCGGTTGATCGGATATCCAAGCTGAAAACTGCAATTCACGAAATGAAATTGGAAGAGGAGAAGAATTCGTTGATCAATCGCATCGGGAGCACTCAACAGCAAGCGATTTCTTATTTGGAAGAAGAGTTCAGATTCTTTCTCGAGGAATCTAAAAATAGCGATACGGATCCTGCTGCGGATACGAAGGGGAAACAAGAACATGATCGTTCTGCATCATCGGACGCTGAATCCGATCAGTTCCAGTTTCCAGGTTACTCCGACGAGATCGTAAACTATTTGAACAAAATCGCTAAGCAAATGATTTCCGGTGGATACGAATCGGAATGCTGCCAAGTCTACATGGTTGCGAGAAGAAACATATTCGAAAAAGAAGCCTTGCTGAAGCTCGGATTCGAGAAACACAGCATCGATGATATCCAGAAGATGAATTGGGAATCAATGGAGAGGGAGATCGCTACATGGATTAAAACCTTCAAACAATGCGCCACCATTTTATTCTCCGGCGAACGGAAACTCGCCGAATCTGTATTTTCAGCGTATCCTCCAATTTCCGCCAGTCTGTTTAGCAATCTAACTCGCGGCATTGTGATTCAACTCTTAAATTTCTCAGAAGGTGTAGCAATGACGAAACGCTCCGCCGAGAAATTGTTCAAGCTTCTTGATATGTACGAAGCTCTTCGCGACATGGTCCCAAAAATGGAAACATTATTTCCAGAAGAATCCGCCAACGAACTCAAAACAGAAACAACAACCGCTCGAACTCGTCTGGGCGAAGCGGCGATTTGCATATTTTGCGATCTCGAAAACTCAATCAAAGCAGACACCGGAAAAACTCCGGTACCAGGCGGCGCCGTACATCCATTAACTCGATACACCATAAACTACTTGAAATACGCTTGCGAGTACAGAAACACACTGGAACAGATTTTCAAAGAACACTCAAAGATCGAACGAGCCGATTCAACAAGTAGACCACATTTCGAAGGCGAACAAGCACCGAGTTACAACTCTAGCGTTGATAATCAATCACTATTCTCCGTGGAACTGACGCGAGTAATGGAGCTTCTGGACTCAAATCTGGAAGGAAAAGCAAAGCTATACAGAGACATAGCACTGAGTTCGATTTTCATGATGAACAACGGACGATACATCTTGCAGAAGATCAAAGGATCTGCAGATATCCATGAACTAGTAGGCGATACGTGGTACAGGAAGAGATCTTCGGATTTGCGTCAGTATCACAAGAGTTACCAGAGAGAAACGTGGGGGAAATTGTTAGGTTGTTTGAATCACGAGGGATTAACGGTGCACGGGAAAGTGGTAAAGCCAGTGCTGAAGGAGAGGTTTAAAGGATTCAACGCGCTGTTCGAAGAGATTCACAAAACACAGAGCTCGTGGATCATAAGCGACGAGCAGCTTCAATCGGAGCTGCGAGTATCGATATCGGCGGTGATGATTCCGGCGTATAGATCATTCTTAGCGAGGTTTTCGCAGTATTTGGATCCGGGGAGACAAACAGAGAAATATATAAAGTTGCAGCCTGAAGATATAGAAACTTACATAGATGATCTATTTGATGGAAATCCAAGCTCCATGGCAAGAAGGAGAACATAA 2157 44.46 MENNQPENQHPLHKTTSFNNNNHAPKLDADDANLTVSVPDPDALVLQTDAAALKSLDNLEDQGQDQNQNQDQDQEQEEKEETKEEEEEQKKEGEEKTEEEESKDEPDHHYNLHTILEDVDQFLSTPHGSRNREEDSVVEIPQFIDKFLDLVDAKIEQYNNEESNAKEKECRVPEDESTFLEAVDRISKLKTAIHEMKLEEEKNSLINRIGSTQQQAISYLEEEFRFFLEESKNSDTDPAADTKGKQEHDRSASSDAESDQFQFPGYSDEIVNYLNKIAKQMISGGYESECCQVYMVARRNIFEKEALLKLGFEKHSIDDIQKMNWESMEREIATWIKTFKQCATILFSGERKLAESVFSAYPPISASLFSNLTRGIVIQLLNFSEGVAMTKRSAEKLFKLLDMYEALRDMVPKMETLFPEESANELKTETTTARTRLGEAAICIFCDLENSIKADTGKTPVPGGAVHPLTRYTINYLKYACEYRNTLEQIFKEHSKIERADSTSRPHFEGEQAPSYNSSVDNQSLFSVELTRVMELLDSNLEGKAKLYRDIALSSIFMMNNGRYILQKIKGSADIHELVGDTWYRKRSSDLRQYHKSYQRETWGKLLGCLNHEGLTVHGKVVKPVLKERFKGFNALFEEIHKTQSSWIISDEQLQSELRVSISAVMIPAYRSFLARFSQYLDPGRQTEKYIKLQPEDIETYIDDLFDGNPSSMARRRT 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11087301 11089457 + Lsi09G009090.1 Lsi09g00909 670522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00909 718 Gene3D Exocyst complex component Exo70 154 716 - -
Lsi09g00909 718 Pfam Exo70 exocyst complex subunit 334 704 IPR046364 GO:0000145|GO:0005546|GO:0006887
Lsi09g00909 718 Coils Coil 56 103 - -
Lsi09g00909 718 MobiDBLite consensus disorder prediction 231 255 - -
Lsi09g00909 718 Coils Coil 195 215 - -
Lsi09g00909 718 Coils Coil 148 171 - -
Lsi09g00909 718 MobiDBLite consensus disorder prediction 231 262 - -
Lsi09g00909 718 MobiDBLite consensus disorder prediction 1 36 - -
Lsi09g00909 718 MobiDBLite consensus disorder prediction 1 26 - -
Lsi09g00909 718 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 97 717 - -
Lsi09g00909 718 PANTHER EXOCYST COMPLEX PROTEIN EXO70 97 717 IPR004140 GO:0000145|GO:0006887
Lsi09g00909 718 MobiDBLite consensus disorder prediction 55 136 - -
Lsi09g00909 718 SUPERFAMILY Cullin repeat-like 174 707 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00909 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101206040 1154.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00009 Lsi-Chr7:125965 Lsi09g00909 Lsi-Chr9:11087301 0 dispersed
Lsi09g00909 Lsi-Chr9:11087301 Lsi07g00994 Lsi-Chr7:13795587 3.02E-80 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g00159 . 12 682 EXO70 exocyst subunit family AT5G03540 75.3 4.8e-278 953.7
Lsi01g01185 . 1 619 EXO70 exocyst subunit family AT5G03540 68.7 1.2e-252 869.4
Lsi01g01185 . 1 619 EXO70 exocyst subunit family AT5G52340 77.4 8.7e-285 976.1
Lsi04g00159 . 14 682 EXO70 exocyst subunit family AT5G52340 70.2 1.5e-260 895.6
Lsi01g01185 . 145 612 EXO70 exocyst subunit family AT5G52350 60.2 5.1e-162 568.2
Lsi04g00159 . 183 682 EXO70 exocyst subunit family AT5G52350 57.9 5.4e-156 548.1
Lsi02g01250 . 1 626 EXO70 exocyst subunit family AT5G58430 67.5 4.2e-247 850.9
Lsi02g01250 . 1 625 EXO70 exocyst subunit family AT1G07000 52.1 5.3e-175 611.3
Lsi07g00009 . 77 663 EXO70 exocyst subunit family AT5G13150 54.5 2.2e-174 609.4
Lsi09g00909 . 106 718 EXO70 exocyst subunit family AT5G13990 54.5 5.2e-190 661.4
Lsi07g00662 CCT,ECH 9 609 EXO70 exocyst subunit family AT1G72470 66.2 2.9e-216 748.4
Lsi07g00662 CCT,ECH 9 607 EXO70 exocyst subunit family AT1G54090 63.0 1.0e-208 723.4
Lsi07g00662 CCT,ECH 9 608 EXO70 exocyst subunit family AT3G14090 63.7 9.0e-218 753.4
Lsi02g00502 . 18 656 EXO70 exocyst subunit family AT5G50380 62.4 4.7e-228 787.7
Lsi06g00498 . 13 650 EXO70 exocyst subunit family AT5G50380 61.5 1.2e-223 773.1
Lsi08g01120 . 13 682 EXO70 exocyst subunit family AT4G31540 73.9 4.5e-295 1010.4
Lsi04g00846 . 58 611 EXO70 exocyst subunit family AT3G55150 51.3 1.3e-150 530.4
Lsi10g01339 . 33 610 EXO70 exocyst subunit family AT3G55150 50.1 3.7e-150 528.9
Lsi04g00846 . 31 609 EXO70 exocyst subunit family AT2G39380 51.1 5.5e-154 541.6
Lsi03g02079 . 26 630 EXO70 exocyst subunit family AT3G09520 56.1 7.3e-183 637.5
Lsi10g01339 . 23 604 EXO70 exocyst subunit family AT5G59730 50.1 1.1e-154 543.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011360 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00909 Lsi_Chr09 FPKM 0.470701 0.706533 0.747251 0.886826 3.187125 2.830705 2.69994 1.745642 1.309077 1.951946
Lsi09g00909 Lsi_Chr00 FPKM 0.0 0.0 0.0 1.293746 1.847069 3.389558 2.175326 1.285722 1.132655 0.0
Lsi09g00909 Lsi_Chr00 FPKM 0.0 0.311864 0.072142 0.434781 0.916283 0.555299 0.886211 0.744892 0.341654 1.350411