Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00929 ATGAAGAGAGAGCTTGAAGATGATAGATCTACTGCAGGTTGTGGGCGGAGGGTTGTGAAAGGAGAGTGTTCTTCAATGTCGAGTGGGAAAGTAAAGATGTGGGAGGAGGAGGAGGAGAAAGACGGCGGTGGCGGTGGAATGGATGAGTTGCTTGCTGTTTTGGGTTACAAGGTTCGAAACTCGGACATGGCGGATGTGGCTTTGAAGTTGGAGCAGCTTGAGATGATGATGGGAACTGCTCAGGAAGATGGGATTTCACATCTCGCTTCTGATACTGTTCATTATAATCCTTCTGATCTCTCTGCTTGGCTTCAAAATATGCTCTCTGAATTCAATAATTCTACTAACCATTTTAATCCTCCCCCTCAATCTTCTCCCTATTCCAATTCTCACCACCGGATTCAATCCACCAAATCCTGTTTGTATGACGATGATTCTGAGTACGATCTTAGCGCCATTCCTGGTGTTGCGGTTTTGCCTCCTAAAGATTCCTCCACAGAAACCGAGTCTAATTCTCGTAAGCGATTGAAGATTGAAGCAGATATCAGTTCGGTGAATTTTTTACCGTCGCCGTCGTCCTCTTCGCCGCCGTTTGTTGCTACGCCGGTGATTGTCTCTGAAACTTCGCGGCCGGTGGTGGTTGTGGAGGAGGATTCACAAGAGACTGGGATTCAACTTGTTCACGCTCTAATGGCTTGCGCTGAAGCGGTGCAGCAAGAGAATATGAAGCTCGCGGATGCGTTGGTGAAGCACATCCGATTTCTTGCAGCGTCGCAAGCCGGCGCTATGAGGAAAGTCGCGACGTATTTCGCTCAAGCTCTTGCTCGTCGGATTTACAGAATCTACTCTCCTCAAGACGGACTTTACTCCTCCTACTCCGATCCTCTCCAGATGCACTTTTACGAAACCTGTCCGTATCTGAAATTCGCGCATTTCACTGCCAATCAAGCCATTCTCGAAGCGTTCGCGACGGCGGCGAGAGTTCATGTCATCGATTTCAGTCTCAATCAAGGTATGCAATGGCCAGCGCTTATGCAAGCACTCGCATTACGCCCTGGAGGTCCGCCGGCGTTTCGATTGACTGGAATCGGCCCGCCGCAGCCGGATAATACGTCGGATTCGTTACAGCAAGTCGGTTGGAAGTTAGCGCAGATGGCAGAGGCCATTGGTGTTGAGTTCGAGTTCAATCACATCGTCTGTAGTAATCTAGCGGATCTTGATCCGGCGGCTCTGGAGATTCGACCGGCGGCGATGGAGGCGGTGGCGGTGAACTCGGTCTTCGATATGCACCGGTTGTTGGCTCGGCCTGGAGCGATAGAGAAAGTTTTGGGATCGATAAAGACGACGAAGCCGAAGATCGTGACGATTGTGGAACAAGAAGCGAACCACAACGGGCCGGTTTTCTTGGACCGGTTTACTGAGGCGTTGCATTATTACTCGAACCTGTTTGACTCGCTGGAGGGGTCCTCGACCGGGTTCGAACCGGCAAGTGAGGACGTGTTGTTGTCTGAGGTTTATTTGGGGAGGCAGATTTGCAACGTGGTGGCTTGTGAAGGAACGAACCGAGTTGAGCGACACGAGTCATTGACTCAGTGGCGAACTCGAATGGAATCAGCAGGGTTCGACCCGGTCCATCTCGGGTCGAACGCATTTAAGCAAGCTAGTATGCTTTTGGCCCTATTCGCTGGCGGAGAAGGGTACAGGGTGGAGGAGAATAATGGGTGTTTAATGCTTGGCTGGCACACTCGACCGTTGATCGCCACGTCAGCATGGCAACTCGCTCCCGATGAGTCAAAGTGA 1800 51.06 MKRELEDDRSTAGCGRRVVKGECSSMSSGKVKMWEEEEEKDGGGGGMDELLAVLGYKVRNSDMADVALKLEQLEMMMGTAQEDGISHLASDTVHYNPSDLSAWLQNMLSEFNNSTNHFNPPPQSSPYSNSHHRIQSTKSCLYDDDSEYDLSAIPGVAVLPPKDSSTETESNSRKRLKIEADISSVNFLPSPSSSSPPFVATPVIVSETSRPVVVVEEDSQETGIQLVHALMACAEAVQQENMKLADALVKHIRFLAASQAGAMRKVATYFAQALARRIYRIYSPQDGLYSSYSDPLQMHFYETCPYLKFAHFTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTSDSLQQVGWKLAQMAEAIGVEFEFNHIVCSNLADLDPAALEIRPAAMEAVAVNSVFDMHRLLARPGAIEKVLGSIKTTKPKIVTIVEQEANHNGPVFLDRFTEALHYYSNLFDSLEGSSTGFEPASEDVLLSEVYLGRQICNVVACEGTNRVERHESLTQWRTRMESAGFDPVHLGSNAFKQASMLLALFAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLAPDESK 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11528705 11530504 + Lsi09G009290.1 Lsi09g00929 670542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00929 599 MobiDBLite consensus disorder prediction 114 136 - -
Lsi09g00929 599 Pfam GRAS domain family 226 592 IPR005202 -
Lsi09g00929 599 Gene3D - 46 111 IPR038088 -
Lsi09g00929 599 PANTHER DELLA PROTEIN RGL1 39 592 IPR030006 GO:0003712|GO:0005634
Lsi09g00929 599 ProSiteProfiles GRAS family profile. 217 592 IPR005202 -
Lsi09g00929 599 SMART DELLA_2 48 121 - -
Lsi09g00929 599 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 39 592 IPR005202 -
Lsi09g00929 599 Pfam Transcriptional regulator DELLA protein N terminal 48 115 IPR021914 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02480 Lsi-Chr2:31270283 Lsi09g00929 Lsi-Chr9:11528705 4.23E-50 dispersed
Lsi03g00413 Lsi-Chr3:4715972 Lsi09g00929 Lsi-Chr9:11528705 9.63E-103 dispersed
Lsi05g00365 Lsi-Chr5:4639927 Lsi09g00929 Lsi-Chr9:11528705 0 dispersed
Lsi07g00800 Lsi-Chr7:8898817 Lsi09g00929 Lsi-Chr9:11528705 7.66E-69 dispersed
Lsi09g00666 Lsi-Chr9:7460521 Lsi09g00929 Lsi-Chr9:11528705 0 dispersed
Lsi09g00929 Lsi-Chr9:11528705 Lsi10g00057 Lsi-Chr10:977937 1.30E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25913 PF03514 GRAS 6.80E-136 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00929 K14494 - csv:101213911 1063.52