Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g00948 | ATGGCGGCCGTAAGCGGCGGAAGAGAGGTGGAGGAAAGAAGCCGGCGGCCGGATTCAGAGGAGGAGGAGTATAACGTAGAGAGCGTTCGTGAAGGGATCAAGTCGTCGCGAGGTAGCCGATTCAATCTGATTCAGAAACAGTTGAGGATTGAACGGAGTCGCAGAAGATTTAGCCGCGAAAATCTCATTAATGGCATTAAGTGCCTCGTTATCCTCCCTGACAGCAGATGGTATAGGGCGTGGACGAAGTTCATACTGATATGGGCAGTGTACTCTTCCTTCTTCACACCCATGGAATTCGGGTTCTTCAGGGGATTACCAGAGAATCTATTTATACTCGACATTGTTGGACAAATTGCTTTCCTCTTTGACATTGTTTTCCAATTCTTCCTTGCCTACAGAGACAGCCAGACATACCGAATGGTCTATAAGCGCACTCCAATAGCACTCAAGTACTTGAAATCCACTTTTGTGACTGATTTGCTCAGCTGTATGCCATGGGACATCCTTTATAAGGCTTGTGGGAAGAGAGAGGAGGTGAGATACCTTCTATGGATAAGGTTATTTCGGGTGCGGAAAGTCACTGCCTTTTTTCAGACGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTCAAGCTACTTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGTATCTTTTACTATTTGGCAACTACTATTCCTGCTGCTGAAGAAGGGTACACATGGATCGGCAGCTTAAAATTAGGGGACTACAGTTACTCACATTTCAGAGATATTGATTTATGGAAACGCTACACCACATCTTTATATTTTGCTATTGTCACCATGGCCACTGTTGGTTATGGTGATATACATGCAGTCAACTTAAGGGAAATGATATTCATTATGATTTACGTGTCATTTGACATGGTTCTCGGTGCTTACTTGATCGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGGGATAAAATGGCAGATGTAATGAAATACATGAACAGAAATAGACTTAGCAGGGAAATCCGTGATCAGATCAAAGGTCACTTGCGATTACAGTATGAAAGTAGCTACACTGAGGCTTCTGTTCTACAGGACATCCCAATATCAATCCGTGCTAAGATTTCCCAAACACTGTACTTGCCTTATATTCAGAATGTTGCTCTCTTTAGAGGATGCTCTCCAGAGTTCATCAATCAAATAGTTATTAGACTCCATGAAGAGTTTTTTCTGCCTGGAGAGGTGATAATGGAACAAGGAAATGTGGTTGATCAACTTTATTTTGTCTGTCATGGTGTGCTGGAGGAAGTGGGAATAGGACAAGATGGTTCAGAAGAAACCATAGATTTACTACAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAATATTCCTCAACCTTATACAGTTCGAGTTTGTGAATTATGTAGACTCTTGCGCCTTGATAAGCAGTCCTTTACAAATATCCTTGACATATACTTTTACGACGGGAGGAAAATCTTGAACAACCTTCTAGAGGGAAAAGAAACAAACCTTCGAGTTAAGCAATTGGAGTCAGATATCACATTTCATATTGGTAAACAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGAGATCTGTACCAATTAAAAGGTCTTGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATCCAGAGGATTCGAGAATATAGTAGTTTTTCTTATTCAGGAAGGAGTAAACATTGACCTTAAAGATAATTTTGGCAATACACCATTATTGGAAGCCATCAAGAATGGGAACGATCAAGTTGCTGTTTTGCTTTCTAAAGAAGGTGCTTCATTGAAGGTTGAGAATCCTGGTAGCTTCCTCTGTACAGCAGTTTCAAGGGGTGATTCAGATCTTCTTAAGAGATTATTGTGCTATGGCATTGATCCCAACTCCAAAGATTATGATTTCCGAACTCCGCTACATATAGCTGCCTCAGAAGGGCTGACTTTGATGGCAAAATTGCTCTTAGAATCTGGAGCTAGTGTTTTCTCAAAGGACAGATGGGGAAACTCCCCGCTTGATGAAGGCCGAATTTGTGGAAACAAGAATATGCTTAAGCTCTTAGAAGAGGCAAGAGCTTCACAGTTGTCAGAATCTCCTTATTCCTCTCGAGAATTCCCAGACAAAAAACACTCAAAGAAATGTACAGTGTTCCCCTCCCACCCATGGGATACTGAAGAAAACAAAAGACCTGGAATTATGCTATGGGTTCCACTCACTATTGAAGAGCTCATCAAGGAATCATCAGAGCAGCTACAAGTTTCAGGTGAATGTTGTATATTATCAGAAGATGGAGGTAAAATTCTTGATGTCCATATGATTGATGAAAGTCAAAAGCTGTATCTAGTTCCTGAAACTCATTAA | 2478 | 41.2 | MAAVSGGREVEERSRRPDSEEEEYNVESVREGIKSSRGSRFNLIQKQLRIERSRRRFSRENLINGIKCLVILPDSRWYRAWTKFILIWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIVFQFFLAYRDSQTYRMVYKRTPIALKYLKSTFVTDLLSCMPWDILYKACGKREEVRYLLWIRLFRVRKVTAFFQTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTIPAAEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSREIRDQIKGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIQNVALFRGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETIDLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFENIVVFLIQEGVNIDLKDNFGNTPLLEAIKNGNDQVAVLLSKEGASLKVENPGSFLCTAVSRGDSDLLKRLLCYGIDPNSKDYDFRTPLHIAASEGLTLMAKLLLESGASVFSKDRWGNSPLDEGRICGNKNMLKLLEEARASQLSESPYSSREFPDKKHSKKCTVFPSHPWDTEENKRPGIMLWVPLTIEELIKESSEQLQVSGECCILSEDGGKILDVHMIDESQKLYLVPETH | 825 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 12206872 | 12217907 | + | Lsi09G009480.1 | Lsi09g00948 | 670561 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g00948 | 825 | CDD | CAP_ED | 399 | 513 | IPR000595 | - | |
Lsi09g00948 | 825 | ProSiteProfiles | Ankyrin repeat region circular profile. | 673 | 705 | - | - | |
Lsi09g00948 | 825 | Pfam | Ion transport protein | 79 | 324 | IPR005821 | GO:0005216|GO:0006811|GO:0016020|GO:0055085 | |
Lsi09g00948 | 825 | SUPERFAMILY | Ankyrin repeat | 548 | 728 | IPR036770 | - | |
Lsi09g00948 | 825 | ProSiteProfiles | Ankyrin repeat profile. | 609 | 641 | IPR002110 | GO:0005515 | |
Lsi09g00948 | 825 | Gene3D | - | 642 | 737 | IPR036770 | - | |
Lsi09g00948 | 825 | ProSiteProfiles | Ankyrin repeat region circular profile. | 576 | 608 | - | - | |
Lsi09g00948 | 825 | SUPERFAMILY | cAMP-binding domain-like | 327 | 517 | IPR018490 | - | |
Lsi09g00948 | 825 | MobiDBLite | consensus disorder prediction | 8 | 30 | - | - | |
Lsi09g00948 | 825 | ProSiteProfiles | KHA domain profile. | 752 | 825 | IPR021789 | - | |
Lsi09g00948 | 825 | ProSiteProfiles | Ankyrin repeat region circular profile. | 609 | 640 | - | - | |
Lsi09g00948 | 825 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 399 | 519 | IPR000595 | - | |
Lsi09g00948 | 825 | ProSiteProfiles | Ankyrin repeat profile. | 673 | 705 | IPR002110 | GO:0005515 | |
Lsi09g00948 | 825 | Pfam | KHA, dimerisation domain of potassium ion channel | 751 | 820 | IPR021789 | - | |
Lsi09g00948 | 825 | PRINTS | Ankyrin repeat signature | 577 | 592 | IPR002110 | GO:0005515 | |
Lsi09g00948 | 825 | PRINTS | Ankyrin repeat signature | 689 | 703 | IPR002110 | GO:0005515 | |
Lsi09g00948 | 825 | SMART | cnmp_10 | 399 | 517 | IPR000595 | - | |
Lsi09g00948 | 825 | Pfam | Cyclic nucleotide-binding domain | 419 | 503 | IPR000595 | - | |
Lsi09g00948 | 825 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Lsi09g00948 | 825 | Pfam | Ankyrin repeats (3 copies) | 646 | 726 | IPR002110 | GO:0005515 | |
Lsi09g00948 | 825 | Pfam | Ankyrin repeats (3 copies) | 551 | 638 | IPR002110 | GO:0005515 | |
Lsi09g00948 | 825 | SMART | ANK_2a | 640 | 669 | IPR002110 | GO:0005515 | |
Lsi09g00948 | 825 | SMART | ANK_2a | 576 | 605 | IPR002110 | GO:0005515 | |
Lsi09g00948 | 825 | SMART | ANK_2a | 673 | 702 | IPR002110 | GO:0005515 | |
Lsi09g00948 | 825 | SMART | ANK_2a | 609 | 638 | IPR002110 | GO:0005515 | |
Lsi09g00948 | 825 | SMART | ANK_2a | 706 | 735 | IPR002110 | GO:0005515 | |
Lsi09g00948 | 825 | Gene3D | - | 80 | 325 | - | - | |
Lsi09g00948 | 825 | ProSiteProfiles | Ankyrin repeat profile. | 576 | 608 | IPR002110 | GO:0005515 | |
Lsi09g00948 | 825 | Gene3D | - | 533 | 641 | IPR036770 | - | |
Lsi09g00948 | 825 | Gene3D | Helix hairpin bin | 326 | 382 | - | - | |
Lsi09g00948 | 825 | SUPERFAMILY | Voltage-gated potassium channels | 73 | 324 | - | - | |
Lsi09g00948 | 825 | PRINTS | EAG/ELK/ERG potassium channel family signature | 223 | 233 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Lsi09g00948 | 825 | PRINTS | EAG/ELK/ERG potassium channel family signature | 271 | 288 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Lsi09g00948 | 825 | PRINTS | EAG/ELK/ERG potassium channel family signature | 114 | 124 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Lsi09g00948 | 825 | PRINTS | EAG/ELK/ERG potassium channel family signature | 315 | 324 | IPR003938 | GO:0005249|GO:0006813|GO:0016020 | |
Lsi09g00948 | 825 | Gene3D | Jelly Rolls | 383 | 523 | IPR014710 | - | |
Lsi09g00948 | 825 | PANTHER | POTASSIUM CHANNEL SKOR-LIKE | 8 | 824 | - | - | |
Lsi09g00948 | 825 | PANTHER | POTASSIUM CHANNEL AKT1 | 8 | 824 | IPR045319 | GO:0005249|GO:0006813 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g00933 | Lsi-Chr6:19182245 | Lsi09g00948 | Lsi-Chr9:12206872 | 1.47E-125 | dispersed | |
Lsi09g00948 | Lsi-Chr9:12206872 | Lsi01g00206 | Lsi-Chr1:1936082 | 1.29E-13 | dispersed | |
Lsi09g00948 | Lsi-Chr9:12206872 | Lsi10g01548 | Lsi-Chr10:19887308 | 2.17E-14 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g00948 | K21867 | - | csv:101210912 | 1547.72 |