Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00948 ATGGCGGCCGTAAGCGGCGGAAGAGAGGTGGAGGAAAGAAGCCGGCGGCCGGATTCAGAGGAGGAGGAGTATAACGTAGAGAGCGTTCGTGAAGGGATCAAGTCGTCGCGAGGTAGCCGATTCAATCTGATTCAGAAACAGTTGAGGATTGAACGGAGTCGCAGAAGATTTAGCCGCGAAAATCTCATTAATGGCATTAAGTGCCTCGTTATCCTCCCTGACAGCAGATGGTATAGGGCGTGGACGAAGTTCATACTGATATGGGCAGTGTACTCTTCCTTCTTCACACCCATGGAATTCGGGTTCTTCAGGGGATTACCAGAGAATCTATTTATACTCGACATTGTTGGACAAATTGCTTTCCTCTTTGACATTGTTTTCCAATTCTTCCTTGCCTACAGAGACAGCCAGACATACCGAATGGTCTATAAGCGCACTCCAATAGCACTCAAGTACTTGAAATCCACTTTTGTGACTGATTTGCTCAGCTGTATGCCATGGGACATCCTTTATAAGGCTTGTGGGAAGAGAGAGGAGGTGAGATACCTTCTATGGATAAGGTTATTTCGGGTGCGGAAAGTCACTGCCTTTTTTCAGACGATGGAGAAGGATATACGTATTAATTATATGTTTACTAGAATTGTCAAGCTACTTGTTGTTGAACTTTACTGCACACATACTGCGGCCTGTATCTTTTACTATTTGGCAACTACTATTCCTGCTGCTGAAGAAGGGTACACATGGATCGGCAGCTTAAAATTAGGGGACTACAGTTACTCACATTTCAGAGATATTGATTTATGGAAACGCTACACCACATCTTTATATTTTGCTATTGTCACCATGGCCACTGTTGGTTATGGTGATATACATGCAGTCAACTTAAGGGAAATGATATTCATTATGATTTACGTGTCATTTGACATGGTTCTCGGTGCTTACTTGATCGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACGGTGAAATTCAGGGATAAAATGGCAGATGTAATGAAATACATGAACAGAAATAGACTTAGCAGGGAAATCCGTGATCAGATCAAAGGTCACTTGCGATTACAGTATGAAAGTAGCTACACTGAGGCTTCTGTTCTACAGGACATCCCAATATCAATCCGTGCTAAGATTTCCCAAACACTGTACTTGCCTTATATTCAGAATGTTGCTCTCTTTAGAGGATGCTCTCCAGAGTTCATCAATCAAATAGTTATTAGACTCCATGAAGAGTTTTTTCTGCCTGGAGAGGTGATAATGGAACAAGGAAATGTGGTTGATCAACTTTATTTTGTCTGTCATGGTGTGCTGGAGGAAGTGGGAATAGGACAAGATGGTTCAGAAGAAACCATAGATTTACTACAACCCAACAGCTCTTTTGGAGAGATTTCAATTCTTTGCAATATTCCTCAACCTTATACAGTTCGAGTTTGTGAATTATGTAGACTCTTGCGCCTTGATAAGCAGTCCTTTACAAATATCCTTGACATATACTTTTACGACGGGAGGAAAATCTTGAACAACCTTCTAGAGGGAAAAGAAACAAACCTTCGAGTTAAGCAATTGGAGTCAGATATCACATTTCATATTGGTAAACAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGAGATCTGTACCAATTAAAAGGTCTTGTTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATCCAGAGGATTCGAGAATATAGTAGTTTTTCTTATTCAGGAAGGAGTAAACATTGACCTTAAAGATAATTTTGGCAATACACCATTATTGGAAGCCATCAAGAATGGGAACGATCAAGTTGCTGTTTTGCTTTCTAAAGAAGGTGCTTCATTGAAGGTTGAGAATCCTGGTAGCTTCCTCTGTACAGCAGTTTCAAGGGGTGATTCAGATCTTCTTAAGAGATTATTGTGCTATGGCATTGATCCCAACTCCAAAGATTATGATTTCCGAACTCCGCTACATATAGCTGCCTCAGAAGGGCTGACTTTGATGGCAAAATTGCTCTTAGAATCTGGAGCTAGTGTTTTCTCAAAGGACAGATGGGGAAACTCCCCGCTTGATGAAGGCCGAATTTGTGGAAACAAGAATATGCTTAAGCTCTTAGAAGAGGCAAGAGCTTCACAGTTGTCAGAATCTCCTTATTCCTCTCGAGAATTCCCAGACAAAAAACACTCAAAGAAATGTACAGTGTTCCCCTCCCACCCATGGGATACTGAAGAAAACAAAAGACCTGGAATTATGCTATGGGTTCCACTCACTATTGAAGAGCTCATCAAGGAATCATCAGAGCAGCTACAAGTTTCAGGTGAATGTTGTATATTATCAGAAGATGGAGGTAAAATTCTTGATGTCCATATGATTGATGAAAGTCAAAAGCTGTATCTAGTTCCTGAAACTCATTAA 2478 41.2 MAAVSGGREVEERSRRPDSEEEEYNVESVREGIKSSRGSRFNLIQKQLRIERSRRRFSRENLINGIKCLVILPDSRWYRAWTKFILIWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIVFQFFLAYRDSQTYRMVYKRTPIALKYLKSTFVTDLLSCMPWDILYKACGKREEVRYLLWIRLFRVRKVTAFFQTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTIPAAEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSREIRDQIKGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIQNVALFRGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETIDLLQPNSSFGEISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFENIVVFLIQEGVNIDLKDNFGNTPLLEAIKNGNDQVAVLLSKEGASLKVENPGSFLCTAVSRGDSDLLKRLLCYGIDPNSKDYDFRTPLHIAASEGLTLMAKLLLESGASVFSKDRWGNSPLDEGRICGNKNMLKLLEEARASQLSESPYSSREFPDKKHSKKCTVFPSHPWDTEENKRPGIMLWVPLTIEELIKESSEQLQVSGECCILSEDGGKILDVHMIDESQKLYLVPETH 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12206872 12217907 + Lsi09G009480.1 Lsi09g00948 670561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00948 825 CDD CAP_ED 399 513 IPR000595 -
Lsi09g00948 825 ProSiteProfiles Ankyrin repeat region circular profile. 673 705 - -
Lsi09g00948 825 Pfam Ion transport protein 79 324 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi09g00948 825 SUPERFAMILY Ankyrin repeat 548 728 IPR036770 -
Lsi09g00948 825 ProSiteProfiles Ankyrin repeat profile. 609 641 IPR002110 GO:0005515
Lsi09g00948 825 Gene3D - 642 737 IPR036770 -
Lsi09g00948 825 ProSiteProfiles Ankyrin repeat region circular profile. 576 608 - -
Lsi09g00948 825 SUPERFAMILY cAMP-binding domain-like 327 517 IPR018490 -
Lsi09g00948 825 MobiDBLite consensus disorder prediction 8 30 - -
Lsi09g00948 825 ProSiteProfiles KHA domain profile. 752 825 IPR021789 -
Lsi09g00948 825 ProSiteProfiles Ankyrin repeat region circular profile. 609 640 - -
Lsi09g00948 825 ProSiteProfiles cAMP/cGMP binding motif profile. 399 519 IPR000595 -
Lsi09g00948 825 ProSiteProfiles Ankyrin repeat profile. 673 705 IPR002110 GO:0005515
Lsi09g00948 825 Pfam KHA, dimerisation domain of potassium ion channel 751 820 IPR021789 -
Lsi09g00948 825 PRINTS Ankyrin repeat signature 577 592 IPR002110 GO:0005515
Lsi09g00948 825 PRINTS Ankyrin repeat signature 689 703 IPR002110 GO:0005515
Lsi09g00948 825 SMART cnmp_10 399 517 IPR000595 -
Lsi09g00948 825 Pfam Cyclic nucleotide-binding domain 419 503 IPR000595 -
Lsi09g00948 825 MobiDBLite consensus disorder prediction 1 30 - -
Lsi09g00948 825 Pfam Ankyrin repeats (3 copies) 646 726 IPR002110 GO:0005515
Lsi09g00948 825 Pfam Ankyrin repeats (3 copies) 551 638 IPR002110 GO:0005515
Lsi09g00948 825 SMART ANK_2a 640 669 IPR002110 GO:0005515
Lsi09g00948 825 SMART ANK_2a 576 605 IPR002110 GO:0005515
Lsi09g00948 825 SMART ANK_2a 673 702 IPR002110 GO:0005515
Lsi09g00948 825 SMART ANK_2a 609 638 IPR002110 GO:0005515
Lsi09g00948 825 SMART ANK_2a 706 735 IPR002110 GO:0005515
Lsi09g00948 825 Gene3D - 80 325 - -
Lsi09g00948 825 ProSiteProfiles Ankyrin repeat profile. 576 608 IPR002110 GO:0005515
Lsi09g00948 825 Gene3D - 533 641 IPR036770 -
Lsi09g00948 825 Gene3D Helix hairpin bin 326 382 - -
Lsi09g00948 825 SUPERFAMILY Voltage-gated potassium channels 73 324 - -
Lsi09g00948 825 PRINTS EAG/ELK/ERG potassium channel family signature 223 233 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi09g00948 825 PRINTS EAG/ELK/ERG potassium channel family signature 271 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi09g00948 825 PRINTS EAG/ELK/ERG potassium channel family signature 114 124 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi09g00948 825 PRINTS EAG/ELK/ERG potassium channel family signature 315 324 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi09g00948 825 Gene3D Jelly Rolls 383 523 IPR014710 -
Lsi09g00948 825 PANTHER POTASSIUM CHANNEL SKOR-LIKE 8 824 - -
Lsi09g00948 825 PANTHER POTASSIUM CHANNEL AKT1 8 824 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00933 Lsi-Chr6:19182245 Lsi09g00948 Lsi-Chr9:12206872 1.47E-125 dispersed
Lsi09g00948 Lsi-Chr9:12206872 Lsi01g00206 Lsi-Chr1:1936082 1.29E-13 dispersed
Lsi09g00948 Lsi-Chr9:12206872 Lsi10g01548 Lsi-Chr10:19887308 2.17E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00948 K21867 - csv:101210912 1547.72