Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00958 ATGGGTTCTTTGCCTTCCGAAGCTTTGGCCGTCGAAATTACCGACACCCATATTCATGCCGGCGCCGTTGCCGTTGCCGTTGCCGCTGCCGGAAAAGACACCTCTGAATGGCTTCTTAATTCCCCCAACCCTCCAACTTTGTGGGAAGAAATTGTCGGCGCCATCAAAGAAAATGCCATTCCTCGAAGTTGCACAAAGACCCCCAAGAAAAACACTTCTTCTTCAAGCTCTGAAAAACAGAGCATTTTCAAAACCATAGTAACCCTTCTGCAGAGAGTGTTCCCGATCCTCAAATTGGCTCGAAATTACAAAGCCTCCAAGTTCAAAAACGACCTCATGGCTGGTTTAACACTCGCCAGTCTCAGCATCCCACAGAGTATTGGGTATGCTAATTTGGCAAAGCTTGATCCTCAGTTCGGTCTCTATACAAGTGTTGTTCCTCCTCTGATTTATGCATTTATGGGGAGTTCGAGAGAGATAGCGATTGGCCCAGTAGCTGTGGTTTCACTGCTTCTTTCGTCTATGCTTCAAGAAATTCAAGATCCTGTTGCAGACCCTGTTGCTTATAGAAGGCTTGTTTTCACTGTAACTTTATTTGCAGGGATTTTCCAAGCATCATTTGGATTCTTGAGATTGGGTTTTCTTGTGGACTTTCTATCTCATGCTGCCATTGTTGGGTTCATGGCTGGGGCTGCCATTCTCATTGGTCTTCAGCAAATGAAAGGCTTACTAGCTATCAGCAATTTCAGCACCAAAACTGATGTGGTTTCTGTTTTAGAATCTGTTGTGAAATCTGTTCACCAGACTTGGTACCCTTTGAACATTGTACTTGGCTGCTCCTTCCTAATCTTTCTCCTTGTAGCTAGGTTCATAGGCAGAAGGAATAAGAAGCTATTTTGGGTGTCAGCCATTGCTCCTCTCATATCAGTTATTCTCTCCACTTTAATAGTGTTTGTTTCAAGAGCTGATAAACATGGAGTTAAGATTGTGAAGGAAGTGAAAGAAGGACTGAACCCAATCTCCATTCATCAGCTTCAATTGAACACTTCAACTGTTGGGTTAGCTGCAAAATCTGGCCTCATTGCTGCCCTTATAGCTCTCACAGAAGCAATCGCGGTCGGTCGATCTTTCGCGTCGATCAAAGGCTACAACATTGATGGGAACAAGGAGATGATAGCCATGGGATTGATGAACATAATAGGCTCTTTAACATCTTGTTATATAGCCACTGGGTCATTTTCAAGAACTGCTGTGAATTATAGTGCTGGTTGTGAAAGTGTATTGTCAAATATAGTGATGGCAATGACAGTGATGGTGACACTGCAATTTATGACTCGGTTTCTTTACTTTACTCCAATGGCCATTTTGGCTTCAATCATTCTCTCAGCTCTTCCTGGTCTCATTGACATTAATGAAGCTCTGCATATTTGGAAGGTTGATAAGCTTGACTTTCTTGCTTGTCTTGGCGCTTTCCTTGGTGTCTTGTTTCATTCTGTGGAATTTGGTCTTCTCGTGGCGGTTGGAGTTTCATTTGCAAAGATATTGTTGATTTCAATAAGACCAGCCACAGAAGAGGTGGGAAGGCTTCCAAGAAGTGACATGTTTTGCAACATGAAGCAATTCCCCATGGCCACCAAAACTCAAGGATTCTCCATTATCAGAATTAACTCTGCCTTGCTTTGTTTTGCCAATGCCAGTTTCATTAGAGACAGGATAATGAGATTGATGGAAGATGATGATGATGATGATATTGAAGAAAAAACAACCAAAGATCAACCTAAACAAGTAATTGTTGACATGTGCAATATTATGAGTATCGATACATCGGGAATCATTGTGTTAGAGGAACTTCACAAAAGATTGTTGTTACACGGCATACAACTAACAATAGCGAGTCCAAAATGGGAAGTGATCCACAAACTAAAAAAGACAAACTTTGTTGAAAGAATTGAAGGAAGAGTTTTCTTATCAGTTGGTGAAGCTGTGGATTCCTGCCTTGGAAATGCTTCCAAATTGCCTTCTCTCTTACCAAAGTCATTGTGA 2043 41.95 MGSLPSEALAVEITDTHIHAGAVAVAVAAAGKDTSEWLLNSPNPPTLWEEIVGAIKENAIPRSCTKTPKKNTSSSSSEKQSIFKTIVTLLQRVFPILKLARNYKASKFKNDLMAGLTLASLSIPQSIGYANLAKLDPQFGLYTSVVPPLIYAFMGSSREIAIGPVAVVSLLLSSMLQEIQDPVADPVAYRRLVFTVTLFAGIFQASFGFLRLGFLVDFLSHAAIVGFMAGAAILIGLQQMKGLLAISNFSTKTDVVSVLESVVKSVHQTWYPLNIVLGCSFLIFLLVARFIGRRNKKLFWVSAIAPLISVILSTLIVFVSRADKHGVKIVKEVKEGLNPISIHQLQLNTSTVGLAAKSGLIAALIALTEAIAVGRSFASIKGYNIDGNKEMIAMGLMNIIGSLTSCYIATGSFSRTAVNYSAGCESVLSNIVMAMTVMVTLQFMTRFLYFTPMAILASIILSALPGLIDINEALHIWKVDKLDFLACLGAFLGVLFHSVEFGLLVAVGVSFAKILLISIRPATEEVGRLPRSDMFCNMKQFPMATKTQGFSIIRINSALLCFANASFIRDRIMRLMEDDDDDDIEEKTTKDQPKQVIVDMCNIMSIDTSGIIVLEELHKRLLLHGIQLTIASPKWEVIHKLKKTNFVERIEGRVFLSVGEAVDSCLGNASKLPSLLPKSL 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12471673 12479456 - Lsi09G009580.1 Lsi09g00958 670571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00958 680 Gene3D STAS domain 520 667 IPR036513 -
Lsi09g00958 680 Pfam STAS domain 543 661 IPR002645 -
Lsi09g00958 680 SUPERFAMILY SpoIIaa-like 546 665 IPR036513 -
Lsi09g00958 680 Pfam Sulfate permease family 108 488 IPR011547 GO:0016021
Lsi09g00958 680 CDD STAS_SulP_like_sulfate_transporter 541 656 - -
Lsi09g00958 680 ProSitePatterns SLC26A transporters signature. 137 158 IPR018045 GO:0008271|GO:0008272
Lsi09g00958 680 ProSiteProfiles STAS domain profile. 560 665 IPR002645 -
Lsi09g00958 680 TIGRFAM sulP: sulfate permease 95 658 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi09g00958 680 PANTHER SULFATE TRANSPORTER 32 669 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi09g00958 680 PANTHER SULFATE TRANSPORTER 2.2 32 669 IPR030315 GO:0008272|GO:0015116
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00180 Lsi-Chr7:1946016 Lsi09g00958 Lsi-Chr9:12471673 0 dispersed
Lsi09g00958 Lsi-Chr9:12471673 Lsi09g00960 Lsi-Chr9:12544281 0 dispersed
Lsi09g00958 Lsi-Chr9:12471673 Lsi09g00959 Lsi-Chr9:12534076 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00958 K17469 - csv:101211892 1130.93