Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00960 ATGGACTCAAGGGGCCATTCCAATGGCGGAGAACTTGAAACAAAAGAGATGGACATTAGAAGTCTTTCATCTTCACGCAACAATACTCAATGCATTCATAAGGTGGGGGTTCCACCGAAGCAAAATCTCTTCAAAGAATTTAAAGCCAGAGTGAAAGAGACTTTCTTTGCAGATGATCCTCTGCGAACCTTCAAGGACCAATCGAAGTCCCGAAAGTTGGTGCTGGGAATTCAGGCTATCTTCCCGATATTTGAATGGGGGAGGAATTACAATCTGACTAAATTTAGAGGAGATATAATTGCTGGATTCACTATTGCAAGTCTGTGTATTCCACAGGATATAGGGTATGCAAAACTTGCTAATTTGGCTCCCCAGTATGGATTATATTCCAGCTTTGTACCACCACTGGTTTATGCTTTGATGGGTAGCTCAAGAGACATAGCGATTGGACCAGTGGCTGTTGTTTCTCTCTTGCTGGGAACACTGCTTCAAAAGGAGATTGATTACCATACACATCCAGAAGAGTATCTGCGGCTTGCATTTACAGCTACTTTTTTTGCTGGGATCACCCAAGCCACTCTAGGGATACTAAGGTTGGGTTTTCTGATTGACTTTCTATCTCACGCTGCCATTGTGGGTTTTATGGGTGGAGCTGCCATCACTATTGCCCTTCAGCAACTTAAAGGCTTTCTTGGTATTCAAAACTTTACAAAGAAAACAGACATTATTTCTGTAATGCGCTCAGTTTTTGAGGCAGCGCATCATGGATGGAACTGGCAGACAATAGTCATTGGAGTAGCTTTTCTAAGTTTTCTTCTATTAGCCAAGTATATTGGAAAGAAGAATAAGAACCTTTTTTGGGTGCCTGCAATTGCTCCATTAATATCAGTTATTCTGTCCACCTTCTTTGTTTACATAACCCATGCAGACCAGAAAGGGGTCGCAATCGTGAAACACATAGAGAAAGGAATTAATCCCTCATCAGTGAAGCAAATCTACTTCACCGGTGACAACCTCCTTAAAGGATTCAGGATTGGCGCAGTGGCCGGTATGATAGCATTAACGGAAGCCATAGCAATTGGAAGAACATTTGCTACCATGAAGGATTACCAGCTTGATGGAAACAAAGAAATGGTGGCACTAGGAACAATGAATGTTATTGGTTCAATGACTTCCTGCTATGTGGCAACAGGCTCATTCTCTCGCTCAGCTGTGAATTACATGTCTGGCTGCCAATCTGCAGTCTCAAACATTGTTATGTCCTGTGTTGTATTTCTAACTTTAGAATTCATCACTCCCCTATTCAAATACACTCCAAATGCTATTCTCGCTGTCATCATTATCTCTGCTGTGATCAACTTGATTGACATTCAAGCAGCAATTTTGCTTTGGAAGATTGATAAATTTGATTTTGTTGCTTGTTTGGGAGCCTTCTTTGGTGTGATATTTGCAAGTGTTGAGATAGGCCTCCTAATTGCTGTCTCTATATCATTTGCTAAGATACTCTTACAAGTAACCAGGCCACGGGTTGCCATTCTCGGAAAGATCCCTAGGACCACAGTATATAGGAACACTCAACAATATCCAGAAGCAACAAGGGTTCCGGGCATTCTCATTGTGAGAGTCGATTCGGCAATTTACTTCTCTAACTCCAATTACATCAAAGAGAGGATATTGAGATGGTTGGCAGATGAGGAAGAACAAATAAAGAAGGCGTATTCAACAAAAACTCAGTTTTTGATTGTTGAAATGTCTCCTGTTACCGACATTGACACTAGTGGAATTCATGCTTTGGAAGAGCTATACAAGAATCTCCAGAAAAGAGACATTCAGCTTGTTTTGGCAAACCCCGGGCCAGCAGTGATTGACAAACTCCATGCATCCGATCTTGCTAATCTGATTGGTGAGGACCATATCTTTCTAACAGTTGCCGAAGCTGTTTCATCTTGCTCCCCAAAATTGGTGGAAGAGGCCTAG 1977 41.78 MDSRGHSNGGELETKEMDIRSLSSSRNNTQCIHKVGVPPKQNLFKEFKARVKETFFADDPLRTFKDQSKSRKLVLGIQAIFPIFEWGRNYNLTKFRGDIIAGFTIASLCIPQDIGYAKLANLAPQYGLYSSFVPPLVYALMGSSRDIAIGPVAVVSLLLGTLLQKEIDYHTHPEEYLRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIQNFTKKTDIISVMRSVFEAAHHGWNWQTIVIGVAFLSFLLLAKYIGKKNKNLFWVPAIAPLISVILSTFFVYITHADQKGVAIVKHIEKGINPSSVKQIYFTGDNLLKGFRIGAVAGMIALTEAIAIGRTFATMKDYQLDGNKEMVALGTMNVIGSMTSCYVATGSFSRSAVNYMSGCQSAVSNIVMSCVVFLTLEFITPLFKYTPNAILAVIIISAVINLIDIQAAILLWKIDKFDFVACLGAFFGVIFASVEIGLLIAVSISFAKILLQVTRPRVAILGKIPRTTVYRNTQQYPEATRVPGILIVRVDSAIYFSNSNYIKERILRWLADEEEQIKKAYSTKTQFLIVEMSPVTDIDTSGIHALEELYKNLQKRDIQLVLANPGPAVIDKLHASDLANLIGEDHIFLTVAEAVSSCSPKLVEEA 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12544281 12549109 + Lsi09G009600.1 Lsi09g00960 670573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00960 658 ProSiteProfiles STAS domain profile. 527 650 IPR002645 -
Lsi09g00960 658 Pfam STAS domain 528 646 IPR002645 -
Lsi09g00960 658 TIGRFAM sulP: sulfate permease 82 646 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi09g00960 658 ProSitePatterns SLC26A transporters signature. 124 145 IPR018045 GO:0008271|GO:0008272
Lsi09g00960 658 SUPERFAMILY SpoIIaa-like 529 651 IPR036513 -
Lsi09g00960 658 Pfam Sulfate permease family 95 475 IPR011547 GO:0016021
Lsi09g00960 658 PANTHER SULFATE TRANSPORTER 1.3 15 657 - -
Lsi09g00960 658 PANTHER SULFATE TRANSPORTER 15 657 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi09g00960 658 Gene3D STAS domain 507 653 IPR036513 -
Lsi09g00960 658 CDD STAS_SulP_like_sulfate_transporter 528 643 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00958 Lsi-Chr9:12471673 Lsi09g00960 Lsi-Chr9:12544281 0 dispersed
Lsi09g00960 Lsi-Chr9:12544281 Lsi11g00133 Lsi-Chr11:1475689 0 dispersed
Lsi09g00959 Lsi-Chr9:12534076 Lsi09g00960 Lsi-Chr9:12544281 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00960 K17470 - csv:101212138 1227.62