Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00971 ATGGGCTCCATAGACGTCCAATCAACCAACGCTGAAAATGGATCCGTCGCCGCCTCTGCTGATGGTCGTCAAAAGCCAGTTCCCGCCGATGGTATGAACCAGACATCTAAAGAGACAGACGGAACGGCGCCTGAGAAGCCTAAGGAATTGGGGCCGACGAAGAAGCGTATGTCCTCCATGCTTCCTCTAGATGTCGGGACCCGCGTCATGTGCCGCTGGAGGGATGGGAAGTACCATCCTGTTAAGGTCATCGAGCGTCGGAAGTTGCAGGCAACTGGTTTTAGTGATTACGAATACTATGTCCATTACACAGAGTTCAATAGGAGACTTGATGAGTGGGTGAAGCTTGACCAACTTGATCTTGATTCAGTTGAGACGGTTGTTGATGAGAAAGTGGAGGACAAGGTAACAGGATTGAAGATGACCCGACACCAGAAGCGGAAGATTGACGAAACCCATGTTGAGGGCCATGAGGAACTCGATGCTGCCAGCTTGAGGGAGCATGAAGAATTTACGAAAGTGAAAAATATTGCAACAATTGAACTTGGAAGATATGAGATTGAGACATGGTATTTCTCCCCCTTTCCACCAGAGTACAATGACACTACAAAGCTCTATTTCTGTGAGTTTTGTCTCAATTTCATGAAGCGCAAAGAACAGCTCCAGAGACATATGAGGAAGTGTGATCTGAAGCATCCTCCTGGTGATGAAATTTATCGATGTGGTACTTTGTCAATGTTTGAGGTTGACGGAAAAAAGAACAAGGTTTATGGGCAGAATCTCTGTTACCTAGCAAAGTTATTTCTGGACCACAAGACCCTCTACTATGATGTTGACCTTTTTCTGTTTTATGTCCTGTGCGAGTGTGATGATCGAGGGTGTCACATGGTTGGATATTTTTCGAAGGAAAAGCATTCAGAGGAATCCTATAATTTGGCATGCATTCTCACCCTTCCTCCTTATCAAAGGAAGGGCTATGGCAAGTTCTTAATAGCCTTTTCAACCTTGAGAGATCTGTTCTCTAGAATTGAAAAAAGCTCGCTGAGCTCTTTTTTTAACTGTTGCCCCCCTTTGTTTTTAACGGAGATTTTGATCTTTTATGAAACTGAGAGATCAGCTTATGAACTCTCCAAGAAGGAAGGTAAAGTTGGCACTCCTGAAAGACCTCTTTCAGACCTTGGGTTGGTGAGCTACAGAGGATACTGGACCAGAGTTCTTTTAGACATCTTGAAAAAGCACAAGGCCAATATCTCTATCAAGGAGCTAAGTGACATGACAGCTATCAAAGCCGAAGATATTTTGAACACACTTCAGAGCCTGGAGTTGATTCAATACAGGAAAGGACAGCATGTTATATGTGCTGACCCCAAGGTGCTGGATCGTCATCTCAAAGCTGCTGGTCGTGGGGGCCTCGAGGTTGATGTTAGCAAATTGATCTGGACTCCATACAGAGAACAGGGTTGA 1464 44.88 MGSIDVQSTNAENGSVAASADGRQKPVPADGMNQTSKETDGTAPEKPKELGPTKKRMSSMLPLDVGTRVMCRWRDGKYHPVKVIERRKLQATGFSDYEYYVHYTEFNRRLDEWVKLDQLDLDSVETVVDEKVEDKVTGLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDTTKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRCGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSTLRDLFSRIEKSSLSSFFNCCPPLFLTEILIFYETERSAYELSKKEGKVGTPERPLSDLGLVSYRGYWTRVLLDILKKHKANISIKELSDMTAIKAEDILNTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYREQG 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12904444 12910853 - Lsi09G009710.1 Lsi09g00971 670584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00971 487 Pfam MYST family zinc finger domain 174 228 IPR040706 -
Lsi09g00971 487 Pfam MOZ/SAS family 233 334 IPR002717 GO:0004402|GO:0006355|GO:0016573
Lsi09g00971 487 Pfam MOZ/SAS family 373 449 IPR002717 GO:0004402|GO:0006355|GO:0016573
Lsi09g00971 487 Gene3D - 173 229 - -
Lsi09g00971 487 MobiDBLite consensus disorder prediction 1 57 - -
Lsi09g00971 487 Gene3D - 51 172 - -
Lsi09g00971 487 CDD CBD_MOF_like 66 135 - -
Lsi09g00971 487 PANTHER HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2 12 334 - -
Lsi09g00971 487 SUPERFAMILY Chromo domain-like 54 173 IPR016197 -
Lsi09g00971 487 SMART chromo_7 77 136 IPR000953 -
Lsi09g00971 487 CDD NAT_SF 284 333 - -
Lsi09g00971 487 PANTHER HISTONE ACETYLTRANSFERASE 12 334 - -
Lsi09g00971 487 PANTHER HISTONE ACETYLTRANSFERASE 373 486 - -
Lsi09g00971 487 Gene3D - 230 349 - -
Lsi09g00971 487 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 173 335 IPR016181 -
Lsi09g00971 487 Gene3D - 390 461 IPR036388 -
Lsi09g00971 487 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 172 482 IPR002717 GO:0004402|GO:0006355|GO:0016573
Lsi09g00971 487 Pfam RNA binding activity-knot of a chromodomain 63 121 IPR025995 -
Lsi09g00971 487 MobiDBLite consensus disorder prediction 1 17 - -
Lsi09g00971 487 PANTHER HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2 373 486 - -
Lsi09g00971 487 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 373 483 IPR016181 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00971 K11308 - csv:101217824 873.618