Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01008 ATGGCTTGTATGATGTCTTCACTTAGGCCAAAGGAAAATGAAAAAGTTCGTGAGGAGCTGGAGAATGCTATCCACATAATATGGAATTGCAATCTGCCTTCGCCAAGATGTGTTGCCGTCGATGCCGTTGTTGAACGCACCTTGGTCTCTGCTCTTCAAGTGTCTGCCTTTCCAGAGATCATCTTCACTAAAGCAGGGAAAATCTTATACCGTGAGAAGGGATTTGTATGTGCAGAAGAGTTGTCTAAAATAATGGCATTCTTCTACTATGGAGCAGCTAAGCCACCATGTTTAAATGATATTGGGGATTATCAGGAGGCGATCCCATCAGTTTCTGTTGATGCCTAG 348 43.39 MACMMSSLRPKENEKVREELENAIHIIWNCNLPSPRCVAVDAVVERTLVSALQVSAFPEIIFTKAGKILYREKGFVCAEELSKIMAFFYYGAAKPPCLNDIGDYQEAIPSVSVDA 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13762663 13763480 + Lsi09G010080.1 Lsi09g01008 670621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01008 115 Gene3D Glutaredoxin 3 89 - -
Lsi09g01008 115 PANTHER THIOREDOXIN-LIKE FOLD DOMAIN-CONTAINING PROTEIN MRL7L, CHLOROPLASTIC 9 112 - -
Lsi09g01008 115 PANTHER THIOREDOXIN-LIKE FOLD DOMAIN-CONTAINING PROTEIN MRL7L, CHLOROPLASTIC 9 112 IPR044701 GO:0006355|GO:0009658
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01008 - - - csv:101210591 198.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01036 Lsi-Chr5:17903497 Lsi09g01008 Lsi-Chr9:13762663 2.40E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1411 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01385 . . . . . . . . . . . . . Lsi09g01008 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006930 1 4 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 2 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01008 Lsi_Chr09 FPKM 16.612318 12.626091 15.684718 16.223391 13.475555 9.074551 13.447466 22.533182 21.727392 25.048546