Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01010 ATGAGCCCTACATTTCCATCCACCGCAGTCCACAGACCTTCTTCTCCTTCCTCTCAAATCCACGCCACTGACAAGAAGCTGAAGCAGAAGCATCAGCAGCAGAAGGGTCCTCGCAGCCCTTTCCATGTTCTCAATGGTATTTCCTTTTCCACCGCCTGCAACAGCTCCAGCATCGGCAGTGACGCTTCCTCCGCCTCCACCGAAGCCCCCAGAGGCTGTCTCAGGTTCTTTCTCTCTCATTCCTCTGCTTCTTCTAAAACCCCTGCTAATAAGCTTAAACCATCTTCCAAAACCCCCAAATCTACCTCCAATCTTCGCCCCATTAAGCCTCTCAGATCTAAGCCACTCAAGGAGAATGCTCCCAAACGGGCTGTTAAGAACTACTCTAGGGCTGCAAAACCTAGCTCCACTAAGTTGGACCCATTGAAGAAAAACTCCCCCTGTTTGTATAGATGGCCATCCGGGAAGAAACCCTGTTCATTAGCTACCCACAAATCTAAAATGTTGGCATCTGGTGGTGAGAAATTGGAGAAGCATGGGGCACATAGTGTAGTGAGGATGGTTGATGATGGTAAATGTGAACCTTCTGATCTTAATTTAGTTCCCAGTGATTTCAATTTCACTCCCATGCGTAAAATGGAAAACGGCTCTGGTTGTGATCCAACAGTTGATAAGGTTGTTGCCCTGGAGAATTCAAACACAGATCATAGCAAAACGCCTCCTGTTCAAGCCTCTGTATCACCAGAATTACAGTGTGGTTCAGCACTTATGCCTACAGCTACTCCCGTTTGCTATGGTGCTGGCTATGTCGTTTCTGGGGTCTCTGACAAGAGAAAGTGCAGACCGAGAGGGCTTCTTATTGTTGGAGAGAATAATGCGTCCATTTCTAAAGTCAAGCCTATTCAGATTTTTGAAGAAGATGAAACCATTACAAGGGACACTTCCAATTCCGTCGTTTTAAAGGTCCCTTCACCCATTGAAGCTTCTATGAATTGGCTTTTATCTCCCTGCAATGAGGAGGATGAGGATCACAAAGAGAAGTCTGAAAATGCTTCACCTCAGTGTAAGAACCTCGCTGAATCGATTGCACTTCGTTCTGTTCCTTCACCATCATCTATCGATGCTCTTCCTCCTGACATATACAGTCCTCCAGAGTTTCAAGGTTTCTTGGAGCCATTATCATTTGAGGACACCTCTCCCTCATGTGCTCCTAATTGCTTGGATGTTATTTTAAAGGAGGGAAGAGGACAACAGAGGTATCAAGTCAATAGGGAGAATTCTCCATTCTCAATTGACTCGTTAAGTAGTGATAATGTTATCCGGACACCTCAATCAGACTCAAATTCGGCTCAAAAAGTTTTCCCTCCGTGGTTAACTGCTGACAGTTATTTGAAATGTGATCAGAATTCAGCGCCTGAATTGTTTTCACCAGCAAATCTACCTCGAGACAACCCTAATGCAATAACGAGTATAACAGATTTAAGTTTCCAATTTGATTGTCTGGCCACAATATCCAATTCCATGGATCTTCATCAATTTCAAAAGATTCTTGAAGATCAGGCTTTTATGAATAGCAATTCCTCCTGTGAGGATTTGTTAAAATCCAAGATGAGAGTATCATGGAGGGAAGGGTTAATGAGCCGGATCTACGAGATGGATGAGTTCGATACTTGTCGGTGCTTGTCAGATGAAGAAGAGAATGTTGATTCTTGCAGCATTAGCTTGTCAGATATCCTTAAGACTCCTCTGGAGCATAATGATTGTGAGGCTGATCCTATAGTTTCTAACCGTTCTTGTTCTCCTGGATTATCAGTTGATGAGGAAGCCGAAGAATATGACAAATGTAAAGAAATGTGGTCTCATCAAGTATCTTGTTCTTGTGCGGAATCCATTAGCACTGATGGAGGTGGCTTGATTGCTTCAGGGGACTCAGATTGGAATTTATGCTACAAAAATGGATTGTTTGATTCTTAA 1974 43.67 MSPTFPSTAVHRPSSPSSQIHATDKKLKQKHQQQKGPRSPFHVLNGISFSTACNSSSIGSDASSASTEAPRGCLRFFLSHSSASSKTPANKLKPSSKTPKSTSNLRPIKPLRSKPLKENAPKRAVKNYSRAAKPSSTKLDPLKKNSPCLYRWPSGKKPCSLATHKSKMLASGGEKLEKHGAHSVVRMVDDGKCEPSDLNLVPSDFNFTPMRKMENGSGCDPTVDKVVALENSNTDHSKTPPVQASVSPELQCGSALMPTATPVCYGAGYVVSGVSDKRKCRPRGLLIVGENNASISKVKPIQIFEEDETITRDTSNSVVLKVPSPIEASMNWLLSPCNEEDEDHKEKSENASPQCKNLAESIALRSVPSPSSIDALPPDIYSPPEFQGFLEPLSFEDTSPSCAPNCLDVILKEGRGQQRYQVNRENSPFSIDSLSSDNVIRTPQSDSNSAQKVFPPWLTADSYLKCDQNSAPELFSPANLPRDNPNAITSITDLSFQFDCLATISNSMDLHQFQKILEDQAFMNSNSSCEDLLKSKMRVSWREGLMSRIYEMDEFDTCRCLSDEEENVDSCSISLSDILKTPLEHNDCEADPIVSNRSCSPGLSVDEEAEEYDKCKEMWSHQVSCSCAESISTDGGGLIASGDSDWNLCYKNGLFDS 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13831516 13833489 + Lsi09G010100.1 Lsi09g01010 670623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01010 657 MobiDBLite consensus disorder prediction 84 108 - -
Lsi09g01010 657 MobiDBLite consensus disorder prediction 84 140 - -
Lsi09g01010 657 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 1 656 - -
Lsi09g01010 657 MobiDBLite consensus disorder prediction 1 22 - -
Lsi09g01010 657 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01010 - - - csv:105434579 1130.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1408 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01382 . . . . . Lcy10g0753 . . . . . . . Lsi09g01010 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008910 1 3 1 2 1 1 3 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01010 Lsi_Chr09 FPKM 5.019157 9.721288 4.173233 5.24312 5.829367 9.621276 6.146066 6.302222 6.268413 5.4851