Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01016 ATGAAGGAGGAAGGAGAGTGTTTTGAAGAGCAGCTTGTAATGCAACAATTCCAAACGATGCAACAAAACGGCGACGTTTTCGGAGGAGGAGGGTTTATTTTTCCTGAGGTTTCTCCGTTGATGTTTCCGGCGACAACTGTGCATCAAGTCCACGGCTTCAACCCATTTTCTAATCCGACGATCCTAGACCACCACGACCCATTTCTCTCGCCGCCGCTGCCGCCAACCTCCTACGGCAGCTTCTTCAACAGAAGAAATGCTTCGTCTCTGCAGTTCCCTCCTTACGATAATGTTAGTTGTGCCCCATTTGAGCTGACCAAGATGACCGCTCAAGAAATAATGGACGCCAAAGCACTTGCAGCCTCTAAAAGCCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAACACCACTAAAACGGACAAGGCGTCATTACTAGCAGAAGTAATCCAACATGTGAAAGAGCTGAAACGACAGACGACATTGATAGCCGACGTAAGTCTGCTGCCAACCGAGCTCGACGAGCTATCAGTGGATGTCGATGCATCGGACGAGGATGGGAAGTTCGTGATCAAAGCCTCGTTTTGTTGCGAGGACAGGTCTGATCTTTTGCCACAAATAATCAAAACCCTAAAATCCCTCCACCTGAGAACTTTAAAAGCGGAGATCATGACGCTCGGCGGCCGCGTAAGGAACGTATTGTTCATCACCGGCGACGAGGACTCCTCAAACGACCAACAAGATCAGGCTCAACAATACCAATACAGCATCAGTTCGATTCAGGAAGCCCTAAAAGGCGTGATGGAAAAGGTTTGTAGCGAAGACCAGTCGTCTTCAGGCAGCATTAAAAGACAAAGGACCAATAATCACAACAACATCAATATCATCCAACACAGGTCTTTCTAG 945 47.2 MKEEGECFEEQLVMQQFQTMQQNGDVFGGGGFIFPEVSPLMFPATTVHQVHGFNPFSNPTILDHHDPFLSPPLPPTSYGSFFNRRNASSLQFPPYDNVSCAPFELTKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTTLIADVSLLPTELDELSVDVDASDEDGKFVIKASFCCEDRSDLLPQIIKTLKSLHLRTLKAEIMTLGGRVRNVLFITGDEDSSNDQQDQAQQYQYSISSIQEALKGVMEKVCSEDQSSSGSIKRQRTNNHNNINIIQHRSF 314
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 14014301 14016199 + Lsi09G010160.1 Lsi09g01016 670629
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01016 314 PANTHER TRANSCRIPTION FACTOR BHLH30 57 306 IPR045847 GO:0003700|GO:0006355
Lsi09g01016 314 CDD ACT_UUR-ACR-like 207 281 - -
Lsi09g01016 314 PANTHER TRANSCRIPTION FACTOR BHLH30 57 306 - -
Lsi09g01016 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 174 IPR036638 GO:0046983
Lsi09g01016 314 SMART finulus 126 175 IPR011598 GO:0046983
Lsi09g01016 314 Pfam Helix-loop-helix DNA-binding domain 123 169 IPR011598 GO:0046983
Lsi09g01016 314 CDD bHLH_AtAIG1_like 115 194 - -
Lsi09g01016 314 MobiDBLite consensus disorder prediction 288 314 - -
Lsi09g01016 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Lsi09g01016 314 Gene3D - 115 175 IPR036638 GO:0046983
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00806 Lsi-Chr1:6366025 Lsi09g01016 Lsi-Chr9:14014301 6.24E-18 dispersed
Lsi03g01333 Lsi-Chr3:24194477 Lsi09g01016 Lsi-Chr9:14014301 1.60E-39 dispersed
Lsi04g00293 Lsi-Chr4:2946974 Lsi09g01016 Lsi-Chr9:14014301 4.67E-93 dispersed
Lsi09g01016 Lsi-Chr9:14014301 Lsi10g01587 Lsi-Chr10:20356765 3.72E-29 dispersed
Lsi09g01016 Lsi-Chr9:14014301 Lsi02g00800 Lsi-Chr2:7392591 1.03E-37 transposed
Lsi09g01016 Lsi-Chr9:14014301 Lsi08g01027 Lsi-Chr8:18860509 1.99E-38 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25914 PF00010 HLH 2.00E-12 No_clan Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01016 - - tcc:18610548 328.946