Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g01016 | ATGAAGGAGGAAGGAGAGTGTTTTGAAGAGCAGCTTGTAATGCAACAATTCCAAACGATGCAACAAAACGGCGACGTTTTCGGAGGAGGAGGGTTTATTTTTCCTGAGGTTTCTCCGTTGATGTTTCCGGCGACAACTGTGCATCAAGTCCACGGCTTCAACCCATTTTCTAATCCGACGATCCTAGACCACCACGACCCATTTCTCTCGCCGCCGCTGCCGCCAACCTCCTACGGCAGCTTCTTCAACAGAAGAAATGCTTCGTCTCTGCAGTTCCCTCCTTACGATAATGTTAGTTGTGCCCCATTTGAGCTGACCAAGATGACCGCTCAAGAAATAATGGACGCCAAAGCACTTGCAGCCTCTAAAAGCCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAACACCACTAAAACGGACAAGGCGTCATTACTAGCAGAAGTAATCCAACATGTGAAAGAGCTGAAACGACAGACGACATTGATAGCCGACGTAAGTCTGCTGCCAACCGAGCTCGACGAGCTATCAGTGGATGTCGATGCATCGGACGAGGATGGGAAGTTCGTGATCAAAGCCTCGTTTTGTTGCGAGGACAGGTCTGATCTTTTGCCACAAATAATCAAAACCCTAAAATCCCTCCACCTGAGAACTTTAAAAGCGGAGATCATGACGCTCGGCGGCCGCGTAAGGAACGTATTGTTCATCACCGGCGACGAGGACTCCTCAAACGACCAACAAGATCAGGCTCAACAATACCAATACAGCATCAGTTCGATTCAGGAAGCCCTAAAAGGCGTGATGGAAAAGGTTTGTAGCGAAGACCAGTCGTCTTCAGGCAGCATTAAAAGACAAAGGACCAATAATCACAACAACATCAATATCATCCAACACAGGTCTTTCTAG | 945 | 47.2 | MKEEGECFEEQLVMQQFQTMQQNGDVFGGGGFIFPEVSPLMFPATTVHQVHGFNPFSNPTILDHHDPFLSPPLPPTSYGSFFNRRNASSLQFPPYDNVSCAPFELTKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTTLIADVSLLPTELDELSVDVDASDEDGKFVIKASFCCEDRSDLLPQIIKTLKSLHLRTLKAEIMTLGGRVRNVLFITGDEDSSNDQQDQAQQYQYSISSIQEALKGVMEKVCSEDQSSSGSIKRQRTNNHNNINIIQHRSF | 314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 14014301 | 14016199 | + | Lsi09G010160.1 | Lsi09g01016 | 670629 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g01016 | 314 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 57 | 306 | IPR045847 | GO:0003700|GO:0006355 | |
Lsi09g01016 | 314 | CDD | ACT_UUR-ACR-like | 207 | 281 | - | - | |
Lsi09g01016 | 314 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 57 | 306 | - | - | |
Lsi09g01016 | 314 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 124 | 174 | IPR036638 | GO:0046983 | |
Lsi09g01016 | 314 | SMART | finulus | 126 | 175 | IPR011598 | GO:0046983 | |
Lsi09g01016 | 314 | Pfam | Helix-loop-helix DNA-binding domain | 123 | 169 | IPR011598 | GO:0046983 | |
Lsi09g01016 | 314 | CDD | bHLH_AtAIG1_like | 115 | 194 | - | - | |
Lsi09g01016 | 314 | MobiDBLite | consensus disorder prediction | 288 | 314 | - | - | |
Lsi09g01016 | 314 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 120 | 169 | IPR011598 | GO:0046983 | |
Lsi09g01016 | 314 | Gene3D | - | 115 | 175 | IPR036638 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00806 | Lsi-Chr1:6366025 | Lsi09g01016 | Lsi-Chr9:14014301 | 6.24E-18 | dispersed | |
Lsi03g01333 | Lsi-Chr3:24194477 | Lsi09g01016 | Lsi-Chr9:14014301 | 1.60E-39 | dispersed | |
Lsi04g00293 | Lsi-Chr4:2946974 | Lsi09g01016 | Lsi-Chr9:14014301 | 4.67E-93 | dispersed | |
Lsi09g01016 | Lsi-Chr9:14014301 | Lsi10g01587 | Lsi-Chr10:20356765 | 3.72E-29 | dispersed | |
Lsi09g01016 | Lsi-Chr9:14014301 | Lsi02g00800 | Lsi-Chr2:7392591 | 1.03E-37 | transposed | |
Lsi09g01016 | Lsi-Chr9:14014301 | Lsi08g01027 | Lsi-Chr8:18860509 | 1.99E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25914 | PF00010 | HLH | 2.00E-12 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g01016 | - | - | tcc:18610548 | 328.946 |