Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g01022 | ATGGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACTCCATTACTATTCCACTCATCGCCCTCCGCTACGGCGGAGGCAGAATCCCGTAAACTTCCATCTTCCCGTTTCAAAGGAGTGGTCCCTCAGCCCAACGGCCGATGGGGCGCTCAGATTTACGAGAAACACCAAAGAGTATGGCTAGGCACTTTTAACGAAGAACACGACGCCGCCAAGGCCTACGACATCGCGGCCCTCCGCTTCCGTGGCCGCGACGCCGTCACCAACTTCAAACCCCTCCACCACGACGACAACGCCGCCGTCGAGGCTGACTTTCTCAACTCCCACTCCAAGCTGGAGATCGTCGACATGCTCCGCAAACACACCTACAATGACGAGCTTCAGCAGAGGAAGCGTCAACGGGGGGCAACGCCGGCGACGGCGGATTCAGCCTCTGGGTCATTCCCCAATCGCTCCGGGTCGGATTCGAATCGGGAAGTGCTGTTCGAGAAAACCGTGACGCCGAGTGACGTGGGGAAGTTGAACCGGCTGGTGATTCCGAAGCAACACGCGGAGAAGAATTTCCCGATGGGGGACGGCGTCGTTTCGGGGAAAGGAATGCTTTTAAACTTCGAGGATATGGGAGGAAAGGTTTGGCGGTTCCGGTACTCGTATTGGAATAGCAGCCAGAGCTATGTGTTGACTAAAGGCTGGAGCCGGTTCGTTAAAGACAACACTCTCCGAGCCGGAGATGTGGTTCGGTTTCTCCGCTCTACCGGTCCGGATAAGCAACTTTACATTCATGCTAACCCCACCCCTGGACCGAGAATTAACCCGGTTCATGTTGTGAAGCTTTTTGGAGTCAATATTTTGCAATTGCCAGTGGGGAAGAAGAACACTCAGACAGAAGGGGTATTCTTGGAATTACAGCCTACCAAGAAGCAAAGAATAATCAAACCTTTGTAA | 954 | 54.19 | MDESTASDSTSISPVTPLLFHSSPSATAEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHDAAKAYDIAALRFRGRDAVTNFKPLHHDDNAAVEADFLNSHSKLEIVDMLRKHTYNDELQQRKRQRGATPATADSASGSFPNRSGSDSNREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMGDGVVSGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDKQLYIHANPTPGPRINPVHVVKLFGVNILQLPVGKKNTQTEGVFLELQPTKKQRIIKPL | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 14369298 | 14371225 | + | Lsi09G010220.1 | Lsi09g01022 | 670635 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g01022 | 317 | Pfam | AP2 domain | 39 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g01022 | 317 | MobiDBLite | consensus disorder prediction | 128 | 161 | - | - | |
Lsi09g01022 | 317 | SUPERFAMILY | DNA-binding pseudobarrel domain | 162 | 263 | IPR015300 | - | |
Lsi09g01022 | 317 | Pfam | B3 DNA binding domain | 165 | 263 | IPR003340 | GO:0003677 | |
Lsi09g01022 | 317 | SUPERFAMILY | DNA-binding domain | 38 | 94 | IPR016177 | GO:0003677 | |
Lsi09g01022 | 317 | ProSiteProfiles | AP2/ERF domain profile. | 39 | 94 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g01022 | 317 | SMART | rav1_2 | 39 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g01022 | 317 | SMART | B3_2 | 165 | 267 | IPR003340 | GO:0003677 | |
Lsi09g01022 | 317 | PANTHER | AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 | 23 | 299 | - | - | |
Lsi09g01022 | 317 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Lsi09g01022 | 317 | Gene3D | AP2/ERF domain | 38 | 95 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi09g01022 | 317 | MobiDBLite | consensus disorder prediction | 136 | 161 | - | - | |
Lsi09g01022 | 317 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Lsi09g01022 | 317 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 23 | 299 | IPR044800 | GO:0003700 | |
Lsi09g01022 | 317 | CDD | B3_DNA | 164 | 264 | IPR003340 | GO:0003677 | |
Lsi09g01022 | 317 | CDD | AP2 | 38 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g01022 | 317 | ProSiteProfiles | B3 DNA-binding domain profile. | 165 | 269 | IPR003340 | GO:0003677 | |
Lsi09g01022 | 317 | Gene3D | - | 154 | 271 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g00288 | Lsi-Chr4:2883210 | Lsi09g01022 | Lsi-Chr9:14369298 | 2.06E-134 | dispersed | |
Lsi06g01166 | Lsi-Chr6:21911166 | Lsi09g01022 | Lsi-Chr9:14369298 | 1.30E-53 | dispersed | |
Lsi09g01022 | Lsi-Chr9:14369298 | Lsi09g01706 | Lsi-Chr9:25589090 | 2.54E-40 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25915 | PF02362 | B3 | 6.20E-28 | CL0405 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g01022 | K09287 | - | csv:101206328 | 553.903 |