Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01022 ATGGACGAAAGCACCGCCAGTGACTCCACCTCCATTTCTCCCGTCACTCCATTACTATTCCACTCATCGCCCTCCGCTACGGCGGAGGCAGAATCCCGTAAACTTCCATCTTCCCGTTTCAAAGGAGTGGTCCCTCAGCCCAACGGCCGATGGGGCGCTCAGATTTACGAGAAACACCAAAGAGTATGGCTAGGCACTTTTAACGAAGAACACGACGCCGCCAAGGCCTACGACATCGCGGCCCTCCGCTTCCGTGGCCGCGACGCCGTCACCAACTTCAAACCCCTCCACCACGACGACAACGCCGCCGTCGAGGCTGACTTTCTCAACTCCCACTCCAAGCTGGAGATCGTCGACATGCTCCGCAAACACACCTACAATGACGAGCTTCAGCAGAGGAAGCGTCAACGGGGGGCAACGCCGGCGACGGCGGATTCAGCCTCTGGGTCATTCCCCAATCGCTCCGGGTCGGATTCGAATCGGGAAGTGCTGTTCGAGAAAACCGTGACGCCGAGTGACGTGGGGAAGTTGAACCGGCTGGTGATTCCGAAGCAACACGCGGAGAAGAATTTCCCGATGGGGGACGGCGTCGTTTCGGGGAAAGGAATGCTTTTAAACTTCGAGGATATGGGAGGAAAGGTTTGGCGGTTCCGGTACTCGTATTGGAATAGCAGCCAGAGCTATGTGTTGACTAAAGGCTGGAGCCGGTTCGTTAAAGACAACACTCTCCGAGCCGGAGATGTGGTTCGGTTTCTCCGCTCTACCGGTCCGGATAAGCAACTTTACATTCATGCTAACCCCACCCCTGGACCGAGAATTAACCCGGTTCATGTTGTGAAGCTTTTTGGAGTCAATATTTTGCAATTGCCAGTGGGGAAGAAGAACACTCAGACAGAAGGGGTATTCTTGGAATTACAGCCTACCAAGAAGCAAAGAATAATCAAACCTTTGTAA 954 54.19 MDESTASDSTSISPVTPLLFHSSPSATAEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEHDAAKAYDIAALRFRGRDAVTNFKPLHHDDNAAVEADFLNSHSKLEIVDMLRKHTYNDELQQRKRQRGATPATADSASGSFPNRSGSDSNREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMGDGVVSGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDKQLYIHANPTPGPRINPVHVVKLFGVNILQLPVGKKNTQTEGVFLELQPTKKQRIIKPL 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14369298 14371225 + Lsi09G010220.1 Lsi09g01022 670635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01022 317 Pfam AP2 domain 39 86 IPR001471 GO:0003700|GO:0006355
Lsi09g01022 317 MobiDBLite consensus disorder prediction 128 161 - -
Lsi09g01022 317 SUPERFAMILY DNA-binding pseudobarrel domain 162 263 IPR015300 -
Lsi09g01022 317 Pfam B3 DNA binding domain 165 263 IPR003340 GO:0003677
Lsi09g01022 317 SUPERFAMILY DNA-binding domain 38 94 IPR016177 GO:0003677
Lsi09g01022 317 ProSiteProfiles AP2/ERF domain profile. 39 94 IPR001471 GO:0003700|GO:0006355
Lsi09g01022 317 SMART rav1_2 39 100 IPR001471 GO:0003700|GO:0006355
Lsi09g01022 317 SMART B3_2 165 267 IPR003340 GO:0003677
Lsi09g01022 317 PANTHER AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 23 299 - -
Lsi09g01022 317 MobiDBLite consensus disorder prediction 1 41 - -
Lsi09g01022 317 Gene3D AP2/ERF domain 38 95 IPR036955 GO:0003700|GO:0006355
Lsi09g01022 317 MobiDBLite consensus disorder prediction 136 161 - -
Lsi09g01022 317 MobiDBLite consensus disorder prediction 1 32 - -
Lsi09g01022 317 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 299 IPR044800 GO:0003700
Lsi09g01022 317 CDD B3_DNA 164 264 IPR003340 GO:0003677
Lsi09g01022 317 CDD AP2 38 93 IPR001471 GO:0003700|GO:0006355
Lsi09g01022 317 ProSiteProfiles B3 DNA-binding domain profile. 165 269 IPR003340 GO:0003677
Lsi09g01022 317 Gene3D - 154 271 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00288 Lsi-Chr4:2883210 Lsi09g01022 Lsi-Chr9:14369298 2.06E-134 dispersed
Lsi06g01166 Lsi-Chr6:21911166 Lsi09g01022 Lsi-Chr9:14369298 1.30E-53 dispersed
Lsi09g01022 Lsi-Chr9:14369298 Lsi09g01706 Lsi-Chr9:25589090 2.54E-40 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25915 PF02362 B3 6.20E-28 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01022 K09287 - csv:101206328 553.903