Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g01025 | ATGATTCAAAAGGAATTTTTCACTGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTTATAGGTAGAGGGAGCTATGGAGTTGTTGCATCTGCCATAGACACTCATTCTGGTGAGAAGGTTGCCATCAAGAAGATAAATAATGTCTTTGAGCATGTTTCTGATGCCACACGGATTCTAAGAGAAATTAAGCTCCTTCGGTTTCTTCGGCATCCTGATATTGTTGACATAAAACATATAATGCTCCCTCCATCCAGGAGGGAGTTCAAAGATTTGTACATTGTTTTTGAGTTGATGGAGTGTGATCTTCATCATGTACTCAAGACTAATGATGATCTCACTCCTCAGCATCACCAGTTTTTCTTGTGTCAACTTCTTAGAGCCTTGAAGTATATACATTCAGCTCATGTGTTCCATAGGGATTTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAGCTGAAGATCTGTGACTTTGGACTTGCGCGTGCATCTTTCAGTGATGCCCCATCTGCTATTTTTTGGACTGATTATGTTGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCATTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATATTTGCTGAAATGCTGGCAAGCAAGCCTTTGTTTCCTGGGAAAAGTGTTGTTCATGAGCTGGATCTAATAACTGACTTACTCGGTACTCCTTCAGCTGAATGTATTGCTAAGATTCGTAATGAAAAGGCTAAAAGGTATTTAAGTGGCATGGGAAAAAAGAATCCAATACCTCTTTCAAGAAAGTTCCCTAATGCAGATCCACTAGCTCTTCGTTTACTTGAGCGTCTTCTTGCATTTGATCCTGAGGATCGTCCTTCTGCAGAGGAGGCATTAGCTGATCCTTATTTCCATGGACTGGCAAATCTGAAGGATGAACCATCCAGGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGATGTCAGAGAGCTTATTTATAGAGAAATTTTAGAGTATCACCCTCAAATGCTACAGGAATACCTTCAAGGTTCTGGGAGTCACTTTTTGTATCCCAGTGGAATTGATCGATTCAAGCGACAATTTGATCATCTTGAGGAATGTTCTGGTAAAGGTGAGAGAGGCAGTCCACTTCTAAGGAAGCATGCCTCCTTGCCTAGGGAGCGAATATATACACCAAGAGATGAAGATGATGAAAAATGTAAAGCAGAACAGCGAAACACAGCTTCTGCTGAACGTGCAGCCCTTCAAAGCCCTCCTGGACTTGCTTATACATTAACTGCTCGAAACGGTTTTGTTCAAGTAGATTGCAATAGTTATAACTTGTTGAGGAGTGCTAGTTTAAATTGTTCTAAATGGGTGGATTAA | 1419 | 40.45 | MIQKEFFTEYGEATQYEIEEVIGRGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLRHPDIVDIKHIMLPPSRREFKDLYIVFELMECDLHHVLKTNDDLTPQHHQFFLCQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFSDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLASKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLSGMGKKNPIPLSRKFPNADPLALRLLERLLAFDPEDRPSAEEALADPYFHGLANLKDEPSRQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSGSHFLYPSGIDRFKRQFDHLEECSGKGERGSPLLRKHASLPRERIYTPRDEDDEKCKAEQRNTASAERAALQSPPGLAYTLTARNGFVQVDCNSYNLLRSASLNCSKWVD | 472 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 14562240 | 14566405 | - | Lsi09G010250.1 | Lsi09g01025 | 670638 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g01025 | 472 | Gene3D | Phosphorylase Kinase; domain 1 | 32 | 353 | - | - | |
Lsi09g01025 | 472 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 4 | 438 | - | - | |
Lsi09g01025 | 472 | SMART | serkin_6 | 16 | 307 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g01025 | 472 | Gene3D | Transferase(Phosphotransferase) domain 1 | 102 | 330 | - | - | |
Lsi09g01025 | 472 | CDD | STKc_TDY_MAPK | 15 | 352 | - | - | |
Lsi09g01025 | 472 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 46 | IPR017441 | GO:0005524 | |
Lsi09g01025 | 472 | ProSiteProfiles | Protein kinase domain profile. | 16 | 307 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g01025 | 472 | MobiDBLite | consensus disorder prediction | 411 | 432 | - | - | |
Lsi09g01025 | 472 | ProSitePatterns | MAP kinase signature. | 51 | 154 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Lsi09g01025 | 472 | Pfam | Protein kinase domain | 16 | 307 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g01025 | 472 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 312 | IPR011009 | - | |
Lsi09g01025 | 472 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 4 | 438 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01162 | Lsi-Chr4:16742281 | Lsi09g01025 | Lsi-Chr9:14562240 | 0 | dispersed | |
Lsi09g01025 | Lsi-Chr9:14562240 | Lsi09g01365 | Lsi-Chr9:21696552 | 0 | dispersed | |
Lsi09g01025 | Lsi-Chr9:14562240 | Lsi06g01294 | Lsi-Chr6:23491733 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83902 | PF00069 | Pkinase | 7.50E-67 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g01025 | - | - | csv:101204645 | 866.3 |