Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01027 ATGCAGCAAAGTTGGAAGTTGAATTGCATATCATCAAGTGAAAGTGGGTGTTTGGAGGGTGATGAAGAAGGAGAAGAATCCATTTTCCTTTCCCTTTCTCCTCCAGGCCAACGCCATTCATTCTCTTCCAAACAACAACAACAACAACAACAATCTTCTCTTCAAAACCCTAATCATCATCAAAATGCTGCCGCCGTCACCGTCGCAATGCACATTGGCCCTCCTCCTCTCTCCTCCTCTGCCCCCGCCGTCCGCCATCTTGACGCCGCCCACTACTGGATCCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAATTCTCCTGCTCTGTCTGCACTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGTCATGGATCAGAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTTAAGCTTCCATGCTATTGCTGTGCAGAAGGGTGCAAGAACAACATAGAGCATCCAAGATCAAGGCCATTGAAGGATTTCAGGACACTCCAAACCCATTACAAAAGAAAACATGGGGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCATTTGCTGTAAGAGGGGATTGGAGGACACATGAGAAGAATTGTGGAAAGCTTTGGTTTTGCATTTGTGGCTCTGATTTTAAGCATAAAAGATCTCTTAAAGACCATGTTAGAGCCTTTGGAGATGGCCATGCACCTCATACTGTTCAACTTTGTGAGGTTGAAGATGATGATGATTGGGATGATCATGATGATGATGATCATATAAATGGACCTCAAGGCTGGTCCATTTATCATTAA 837 45.28 MQQSWKLNCISSSESGCLEGDEEGEESIFLSLSPPGQRHSFSSKQQQQQQQSSLQNPNHHQNAAAVTVAMHIGPPPLSSSAPAVRHLDAAHYWIPTPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSEYRKGPESLRGSKPASSMLKLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDDWDDHDDDDHINGPQGWSIYH 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14756298 14757711 + Lsi09G010270.1 Lsi09g01027 670640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01027 278 Gene3D Classic Zinc Finger 149 239 - -
Lsi09g01027 278 Pfam Zinc finger, C2H2 type 107 126 IPR013087 -
Lsi09g01027 278 SMART c2h2final6 107 129 IPR013087 -
Lsi09g01027 278 SMART c2h2final6 155 187 IPR013087 -
Lsi09g01027 278 SMART c2h2final6 192 212 IPR013087 -
Lsi09g01027 278 Gene3D Classic Zinc Finger 106 129 - -
Lsi09g01027 278 PANTHER ZINC FINGER PROTEIN WIP2 1 267 IPR043584 GO:0003700|GO:0010468
Lsi09g01027 278 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Lsi09g01027 278 SUPERFAMILY beta-beta-alpha zinc fingers 175 212 IPR036236 -
Lsi09g01027 278 SUPERFAMILY beta-beta-alpha zinc fingers 102 130 IPR036236 -
Lsi09g01027 278 PANTHER ZINC FINGER PROTEIN WIP6 1 267 - -
Lsi09g01027 278 MobiDBLite consensus disorder prediction 33 61 - -
Lsi09g01027 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01705 Lsi-Chr3:28423079 Lsi09g01027 Lsi-Chr9:14756298 4.86E-100 dispersed
Lsi05g00512 Lsi-Chr5:6414022 Lsi09g01027 Lsi-Chr9:14756298 2.63E-17 dispersed
Lsi09g01027 Lsi-Chr9:14756298 Lsi10g01052 Lsi-Chr10:14750518 2.25E-75 dispersed
Lsi09g01027 Lsi-Chr9:14756298 Lsi02g02581 Lsi-Chr2:32280466 2.85E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25916 PF00096 zf-C2H2 0.0089 CL0361 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01027 - - csv:101216722 491.886