Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g01027 | ATGCAGCAAAGTTGGAAGTTGAATTGCATATCATCAAGTGAAAGTGGGTGTTTGGAGGGTGATGAAGAAGGAGAAGAATCCATTTTCCTTTCCCTTTCTCCTCCAGGCCAACGCCATTCATTCTCTTCCAAACAACAACAACAACAACAACAATCTTCTCTTCAAAACCCTAATCATCATCAAAATGCTGCCGCCGTCACCGTCGCAATGCACATTGGCCCTCCTCCTCTCTCCTCCTCTGCCCCCGCCGTCCGCCATCTTGACGCCGCCCACTACTGGATCCCTACGCCTGCCCAAATCCTCGTTGGTCCCACCCAATTCTCCTGCTCTGTCTGCACTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGTCATGGATCAGAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGCCAGCTTCATCAATGCTTAAGCTTCCATGCTATTGCTGTGCAGAAGGGTGCAAGAACAACATAGAGCATCCAAGATCAAGGCCATTGAAGGATTTCAGGACACTCCAAACCCATTACAAAAGAAAACATGGGGCAAAGCCTTTCAGTTGTAGGAAATGTGGGAAGCCATTTGCTGTAAGAGGGGATTGGAGGACACATGAGAAGAATTGTGGAAAGCTTTGGTTTTGCATTTGTGGCTCTGATTTTAAGCATAAAAGATCTCTTAAAGACCATGTTAGAGCCTTTGGAGATGGCCATGCACCTCATACTGTTCAACTTTGTGAGGTTGAAGATGATGATGATTGGGATGATCATGATGATGATGATCATATAAATGGACCTCAAGGCTGGTCCATTTATCATTAA | 837 | 45.28 | MQQSWKLNCISSSESGCLEGDEEGEESIFLSLSPPGQRHSFSSKQQQQQQQSSLQNPNHHQNAAAVTVAMHIGPPPLSSSAPAVRHLDAAHYWIPTPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSEYRKGPESLRGSKPASSMLKLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDDDWDDHDDDDHINGPQGWSIYH | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 14756298 | 14757711 | + | Lsi09G010270.1 | Lsi09g01027 | 670640 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g01027 | 278 | Gene3D | Classic Zinc Finger | 149 | 239 | - | - | |
Lsi09g01027 | 278 | Pfam | Zinc finger, C2H2 type | 107 | 126 | IPR013087 | - | |
Lsi09g01027 | 278 | SMART | c2h2final6 | 107 | 129 | IPR013087 | - | |
Lsi09g01027 | 278 | SMART | c2h2final6 | 155 | 187 | IPR013087 | - | |
Lsi09g01027 | 278 | SMART | c2h2final6 | 192 | 212 | IPR013087 | - | |
Lsi09g01027 | 278 | Gene3D | Classic Zinc Finger | 106 | 129 | - | - | |
Lsi09g01027 | 278 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 267 | IPR043584 | GO:0003700|GO:0010468 | |
Lsi09g01027 | 278 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 109 | 129 | IPR013087 | - | |
Lsi09g01027 | 278 | SUPERFAMILY | beta-beta-alpha zinc fingers | 175 | 212 | IPR036236 | - | |
Lsi09g01027 | 278 | SUPERFAMILY | beta-beta-alpha zinc fingers | 102 | 130 | IPR036236 | - | |
Lsi09g01027 | 278 | PANTHER | ZINC FINGER PROTEIN WIP6 | 1 | 267 | - | - | |
Lsi09g01027 | 278 | MobiDBLite | consensus disorder prediction | 33 | 61 | - | - | |
Lsi09g01027 | 278 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 107 | 134 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01705 | Lsi-Chr3:28423079 | Lsi09g01027 | Lsi-Chr9:14756298 | 4.86E-100 | dispersed | |
Lsi05g00512 | Lsi-Chr5:6414022 | Lsi09g01027 | Lsi-Chr9:14756298 | 2.63E-17 | dispersed | |
Lsi09g01027 | Lsi-Chr9:14756298 | Lsi10g01052 | Lsi-Chr10:14750518 | 2.25E-75 | dispersed | |
Lsi09g01027 | Lsi-Chr9:14756298 | Lsi02g02581 | Lsi-Chr2:32280466 | 2.85E-95 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25916 | PF00096 | zf-C2H2 | 0.0089 | CL0361 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g01027 | - | - | csv:101216722 | 491.886 |