Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01047 ATGGCATCTGCCATGGCCAAACCCAAAATGCAGAGAAAGCTCAGCAGACAGAGCAACGAAAACCAGAAACCGAAGCCGCCGTCTTGGGCAGTTGTTAGAGGGATATTCAGTTGCAAGTACCTGCAGCCTCAGCAACAACAACAACAACAACATCAATTACCACGAAAAGAGAAACAACAGGAGCAAGCAACAGAAGAGATTAGCAAGAACAGTAAGAAAATGAAGTGTTCAGGTTCACTCTGTAGCAACACCAAGATAACGCACAGGCTTGAAGCAACAGCATCCCCGGAAGTTCACAAGAAAAGGGCATTATCTTCCAGAAACAATGAATCTTCAAGTTCAATTAGTAGATCCACCAAAGCTCCTCCTTTGAATGAACAAAATGGAGTTGTATCAGCCACATGTTCATCATTATCTGCATCATCTTCTTCTAATTCCTCCAATGGAGCCTCCTCTTTCAGGGGAATGCCTTTCAGAAGGTTTTACGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTATTGGGATGACTAGAGATCCTTCTCTTAGAGCAACCATTTGCCCTTGTCCTGATTGTGGTGAGATTTTCATGAAACCTGAAACTTTGGAGCTTCATCAGAGTGTTAGACATGCAGTATCTGAACTTGGTCCTGAAGACACGAGCAAGAACATAGTGGAAATCATATTCCAGTCTAGCTGGCTGAAAAAGCAAACCCCAATTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACACCCCAAAAACCATATCGAAATTCGAGGAATACAGGGATTCCATTAAAGCCAAAGCCACCAAGCTTCCAAAGAAGTACCCACGTTGCATAGCAGACGGTAACGAACTCCTAAGGTTCCACTGCACCACACTGGGCTGTTCATTGGGCCTAAATGGCTCATCCAACCTCTGCAGTTCAATCCCACAATGCAATGTGTGTAGCATAATCAAGAATGGGTTCAAGGTGGCTGCAGAGTCCACCGGAGGGGATGCTGGAAAGGGCATTCTAACAACCGCTACAAGTGGAAAGGCTCATGATAGTGCCGGAGTATCATCGGATGGCAACAGCAACGACAAACGAGCAATGCTGGTTTGCCGGGTAATAGCTGGGAGGGTGAAGAAGAGTTCAGAAGGCAGCATGGAAGATTACGACTCATTGGCCGGAGCAGCAGGCATGTATTCCAATTTGGATGAGTTGTACGTGTTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTCATTTATGGAGACAGCAATCTGCCACCAACTGTTCTGCCGGAGACATGGCCTCCAAGACGGATCAGTTGTTAG 1326 45.4 MASAMAKPKMQRKLSRQSNENQKPKPPSWAVVRGIFSCKYLQPQQQQQQQHQLPRKEKQQEQATEEISKNSKKMKCSGSLCSNTKITHRLEATASPEVHKKRALSSRNNESSSSISRSTKAPPLNEQNGVVSATCSSLSASSSSNSSNGASSFRGMPFRRFYGCYECKMVIDPVIGMTRDPSLRATICPCPDCGEIFMKPETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTISKFEEYRDSIKAKATKLPKKYPRCIADGNELLRFHCTTLGCSLGLNGSSNLCSSIPQCNVCSIIKNGFKVAAESTGGDAGKGILTTATSGKAHDSAGVSSDGNSNDKRAMLVCRVIAGRVKKSSEGSMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGDSNLPPTVLPETWPPRRISC 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 15707830 15710361 - Lsi09G010470.1 Lsi09g01047 670660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01047 441 MobiDBLite consensus disorder prediction 107 127 - -
Lsi09g01047 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 216 IPR013087 -
Lsi09g01047 441 Gene3D - 212 421 - -
Lsi09g01047 441 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 28 420 - -
Lsi09g01047 441 MobiDBLite consensus disorder prediction 92 127 - -
Lsi09g01047 441 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 28 420 - -
Lsi09g01047 441 MobiDBLite consensus disorder prediction 92 106 - -
Lsi09g01047 441 MobiDBLite consensus disorder prediction 54 72 - -
Lsi09g01047 441 SUPERFAMILY ADP-ribosylation 213 422 - -
Lsi09g01047 441 MobiDBLite consensus disorder prediction 42 78 - -
Lsi09g01047 441 MobiDBLite consensus disorder prediction 1 29 - -
Lsi09g01047 441 ProSitePatterns Zinc finger C2H2 type domain signature. 188 211 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01739 Lsi-Chr4:24718482 Lsi09g01047 Lsi-Chr9:15707830 9.97E-104 dispersed
Lsi05g00669 Lsi-Chr5:8814260 Lsi09g01047 Lsi-Chr9:15707830 4.98E-74 dispersed
Lsi09g01047 Lsi-Chr9:15707830 Lsi10g01422 Lsi-Chr10:18313565 1.91E-63 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25919 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01047 - - bhj:120067077 717.998