Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01082 ATGGCGTCAACCGAAATCATTCCCATTATCCAACATCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACCATCTCCACTACTGTAGACACAATGTTAATCAAAGAATATGGTATTAAGGATGGAAATCAACATCCCTTTCTTCTCCAGCTCACAAGTCAAGCCACCGCCGCCGCCAATTTCAAACGGCAAAGAAGGCGGCGAGTTTCCAGAGAAAGTATATTGCCCGGCCGCCGCTATTCACTGGGCCACAATGTTGGGCATGCTGTGGCCGTCACATTTCTTGTGGTGCGTTTATGTTTCAAATTTCTGCGATGCCTTTGGATAGGCTACAAATGGATAGCAAGATTTCTATCCTTTGGATGTTATGTGGCTTTTATTTTCCCTGGTGTACTTCAAGTGAACTTCTACATTGCAGTTGCATATTATTATCTTTACTGTGGCCAGATTCGAAGAAGCATAAAGTATGGCGATCAATCAAGAAATAGGCATGGGCAGAAGCCAAAGCCTGTGGTTGCATTTGTAACTGGTGGAGCCTGGATTATGGGTTATAAGGCATGGGGTTCTCTTCTTGGATCACAGTTATCAGAGAGAGACATTATAGTAGCTTGCCTTGATTACAGGACCTTCTTTCAGGTCTTCAGGAAGATACTGAACATTTTACTTAAACAATCTTCTGGTAGAAATTTTCCCCAAGGAACCATGAGTGATATGATAAAGGATGTTTCTCAAGGCATCTCATTTGTATTCAATAATATTGCCGAGTATGGAGGCGATCCTAACAGGATTTATCTTATGGGACAGTCAGCTGGTGCACATATTGCGGCTTGCACACTTGTAGAGCAGGCAATCAAAGAAGCTGGTGGTGAGAGAGTTTCTTGGAGTGTCTCCAGGATAAAAGCTTACTTTGGGTTGTCAGGGGGTGAATTTAATGACATTATAACTGGTCTTCGGCTGCAAACGCCAAGTCACTTGCCAGAACCAGAAGTACAAAGCGCCCGTTTGAGGATGACGGCTAGGTACAATATGATAAATCTGAAGGACTACTTTCATGGTCGAGGTCTTCACAGATCCATCTTTTTAAGCATAATGGAAGGAGAAGAGTCCCTGCAAAGATTTTCCCCGGAGGTTATAGTACAGGATCCAAAGATTAAAGATGCAGTTTCCCTGCTTCCTCACTTGACTCTATTTCATGGAACTGCAGATTATTCCATACCATCAGATGCCAGTAAGAGCTTTGCAGAGGTGCTTGAAAGACTTGGAGTAAAAGTTGAAACAGTTCTATACAAAGGAAAGACGCATACAGATTTGTTTGTCCAGGATCCAATGAGAGGTGGTAAAGATCAGTTGGTTGAAGATTTGATTTTCATCATTCATGAAAATGATAGGGATGCTCTTGCCAGAGATGCAATGGGTCGTCGAAGGAGACGCCTCGTACCGGAGTTATTGTTGAAGTTAGCACGCTTCTTTGAGGCTGAATTGGACTTCGAGGCCGAAGCTTTCGGTGCAGCATTAGATTTAGCTTCCTTCTTAGACTGCCCAACTTGTTGTGCTCCCACTGCAGGTTTTTCAACCTTCAAAGACGCCATGGAGGAGCTGCTGGAACCAACTTACTGA 1614 43.37 MASTEIIPIIQHPSSSSSSSSSTISTTVDTMLIKEYGIKDGNQHPFLLQLTSQATAAANFKRQRRRRVSRESILPGRRYSLGHNVGHAVAVTFLVVRLCFKFLRCLWIGYKWIARFLSFGCYVAFIFPGVLQVNFYIAVAYYYLYCGQIRRSIKYGDQSRNRHGQKPKPVVAFVTGGAWIMGYKAWGSLLGSQLSERDIIVACLDYRTFFQVFRKILNILLKQSSGRNFPQGTMSDMIKDVSQGISFVFNNIAEYGGDPNRIYLMGQSAGAHIAACTLVEQAIKEAGGERVSWSVSRIKAYFGLSGGEFNDIITGLRLQTPSHLPEPEVQSARLRMTARYNMINLKDYFHGRGLHRSIFLSIMEGEESLQRFSPEVIVQDPKIKDAVSLLPHLTLFHGTADYSIPSDASKSFAEVLERLGVKVETVLYKGKTHTDLFVQDPMRGGKDQLVEDLIFIIHENDRDALARDAMGRRRRRLVPELLLKLARFFEAELDFEAEAFGAALDLASFLDCPTCCAPTAGFSTFKDAMEELLEPTY 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17186268 17192538 - Lsi09G010820.1 Lsi09g01082 670695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01082 537 Gene3D alpha/beta hydrolase 146 442 IPR029058 -
Lsi09g01082 537 PANTHER ARYLACETAMIDE DEACETYLASE 55 211 - -
Lsi09g01082 537 SUPERFAMILY alpha/beta-Hydrolases 163 442 IPR029058 -
Lsi09g01082 537 PANTHER ARYLACETAMIDE DEACETYLASE 227 307 - -
Lsi09g01082 537 PANTHER ARYLACETAMIDE DEACETYLASE 340 482 - -
Lsi09g01082 537 PANTHER ISOPRENYLCYSTEINE ALPHA-CARBONYL METHYLESTERASE ICMEL2-RELATED 227 307 - -
Lsi09g01082 537 PANTHER ISOPRENYLCYSTEINE ALPHA-CARBONYL METHYLESTERASE ICMEL2-RELATED 55 211 - -
Lsi09g01082 537 PANTHER ISOPRENYLCYSTEINE ALPHA-CARBONYL METHYLESTERASE ICMEL2-RELATED 340 482 - -
Lsi09g01082 537 Pfam Carboxylesterase family 164 282 IPR002018 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00304 Lsi-Chr4:3067657 Lsi09g01082 Lsi-Chr9:17186268 4.00E-138 dispersed
Lsi05g00397 Lsi-Chr5:4998719 Lsi09g01082 Lsi-Chr9:17186268 7.71E-121 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01082 K15889 - csv:101213470 613.224