Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01091 ATGAGGACTGGAAACGGAAAGAGGAAGCTGCGGCTAAGCAAGATTTATTCATTTGCTTGTGGAAGAACATCATTGAAAGATGAAGATCATTCACAAATTGGGATGCCCGGGTTCTCCCGGGTGGTTTTCTGTAATGATCCTGATTGTTTGGAGGTTGGAATGCGTAATTATGTTAACAATTCCATCAGGTCTACAAAGTATACACCCATCAATTTTTTGCCCAAGTCCTTGTTTGAGCAGTTCAGGAGGGTGGCTAATTTTTACTTCTTGGTTGCTGGAATACTAGCCTTCACTCCTCTTGCTCCTTTTACTGCCGTCAGCGCAATTATCCCTCTTATTGCAGTCATTATCGCGACAATGGTTAAAGAAGGTATTGAAGATTGGCGACGACAGGCACAGGATATTGAGGTGAATAATAGAAAGGTTAAGGTTCATCAAGGCAATGGATTCTTTGATTTTACTGAATGGAAAACTTTGAGGGTCGGAGATATAGTGAAGGTTGAAAAGGATCAATACTTTCCAGCGGACCTTCTTTTAATTTCATCATGCTATGAGGATGGAATCTGTTATGTAGAAACGATGAACCTTGATGGGGAAACAAATCTGAAGGTAAAGCAAGCATTGGATGCAACTGCATTTGCAAATGAGGATTCTAACTTCCGTAATTTTAAGGCTACAATCAAATGTGAAGACCCAAATGCAAATCTCTATACCTTTGTTGGAAGCATGGACTTTGAAGAGAACCAATATCCACTTTCTCCACAAAATCTTCTCCTGAGAGACTCCAAACTCCGAAACACAGAATATATATATGGGGTTGTTGTCTTTACTGGTCAAGATTCAAAGGTTATTCAAAATTCTACTGATCCGCCTTCCAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATCATATATCTGCTGTTTAGCATTCTATTCATGCTGGCATTTATTGGATCTATAGTCTTTGGCGTCGTGACTAAAGATGATCTGAAAAGTGGGAGGACAAAGAGATGGTATCTTAGACCAGATGATTCTACTATTTTCTTTGATCCCAAGAATGCACCAGCTGCTGCAATTTTTCACTTTCTGACTGCACTGATGTTGTATAACTACTTTATCCCTATATCATTGTATGTGTCTATTGAAATTGTCAAAGTTCTTCAGAGTATCTTCATCAATCAAGACATTCACATGTACTATGAAGAAGCTGACAAACCAGCACATGCCCGCACCTCCAATTTGAATGAGGAACTTGGTCAAGTTGACACTATACTCTCTGACAAGACTGGCACTTTGACCTGTAACTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGAACAGCGTATGGCAGTGGTGTCACTGAAACTGAGAGAGTTATGGAAGGCAGAAATGGTATGCCAATGCTTAATGGCAATGGCAATGGAAATATCTATAAGCACAATGAGGATGCTACAGATACAAATCCCTCTGTCAAAGGCTTTAATTTTAAGGACAAAAGGATAATGAACGGAAACTGGGTTAATGAACCTCATGCAGATGTCATCCAGAAGTTCTTCCGCCTCCTCGCAACTTGTCATACAGCTATTCCTGATGTGGACGAAAACACGGGAAAGGTTTCATATGAAGCTGAATCGCCAGATGAAGCAGCATTTGTAATTGCTGCCAGAGAAATTGGTTTTGAATTCTACCAGAGGACACAGACAAGTATATCAATTCGTGAATTGGATCCTAGGTCTGGAAGGAAGGTCGAAAGGTCATATAAGCTTTTAAATGTTTTGGAGTTTAATAGCGCCCGAAAGAGGATGTCTGTCATAATTAGAGATGAAGAAGGGAAAGTACTATTACTATGCAAAGGTGCTGACAGTGTCATGTTTGAGAGGCTTGCGAAGAATGCTAGCAAATTTGAAGAGCAAACAAAGGAGCATATCAATGAATATGCTGATGCAGGCCTGCGGACCTTGGTACTTGCTTATCGTGAACTTGATGAGGAGGAATACAAGGAATTTGATAGGAAATTCTATGAAGCAAAGAATTCAGTTAGTGCAGAGAGGGAGTCAATGATTGATAAAGTAACAGATCGCATTGAAAGGAATTTAATTCTTCTTGGTTCCACAGCAGTTGAGGACAAGCTTCAAAATGGGGTCCCTGAATGCATAGACAAACTTGCTCAAGCTGGGATTAAGATCTGGGTTTTGACTGGAGACAAGATGGAGACTGCGATCAATATTGGCAGTATATTTATTTATGCTAGGAAACGTGAATATAAAAATATTTCCAATTTTTGCGTTGGAACTGAGCTGAAGTTTCAAAACGTGGCATCAAAAGATAGCATCGTCCACAAGATAACTCGGGCAAGATCTCAGATCACTGCATCAAGTGGAAGCTCTGAGGCTTATGCATTGATAATTGATGGGAAATCACTTACCTATGCTCTAGAGGATGATGTGAAGAATGCATTCCTTGACCTTGCAATTGGATGTGCGTCTGTTATTTGTTGTCGCTCATCTCCAAAGCAAAAGGCAATGGTCACTAAGTTGGTTAAACTTGCAACGGGGAAAACAACATTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGAGTTGGAATCAGTGGTGCCGAAGGGATGCAGGCATGGAAAGCGCTTATTATGCTATTTGCAGTCATGTCGAGTGATATTGCAATTGCTCAGTTCAGATATTTGGAGCGTCTTCTACTTGTGCATGGACATTGGTGTTACAGGAGATTATCATCAATGATATGCTACTTTTTCTACAAGAATTTCACATTTGGTTTTACGCTTTTCTTATATGAGGCATACAGTTCGTTCTCTGGACAACCTGCATATAACGACTGGTTTATGTCACTTTACAACGTCGTGTTCTCATCTCTGCCAGTTGTGGCTCTCGGGGTGTTTGATCAAGATGTGTCTGCAAGATACTGCCTCAAGTTTCCAATGTTGTACCAGCAAGGTGTGCAAAACGTCCTCTTCAGCTGGCTTAGGATACTCGGCTGGATGTTTAATGGTCTGTGTAGTGCATTGATCATTTTCTTTTTCTGCACAAGTGGAATGCAGCATCAAGCATTTAATCCCGAGGGGAAAACCGTGGGGAGGGATATTCTAGGAGCGACGATGCTGTCATGTGTTGTTTGGGTTGTCAACTTGCAGATGGCACTCTCTGTTAGCTACTTCACTTTGGTACAACATATTTTCATCTGGGCTTCAATCTTTATCTGGTACCTTTTTCTGATGATATATGGAGCCTTTCCTGCCAGCATTTCGACAAATGCATATCGTGTGTTCCTCGAAGCCCTCGCTCCTGCCGGGTCTTATTGGCTTCTGCTGATATTTGTGGTGATCTCTACTCTCATTCCATTCTTCGTATACTCAGCGTTACAGTTGAATTTCTTTCCCATGTACCATGAAAAAATACAGTGGATAAGGCACGATGGTCAGGGGCAGATAGACGATCCCGAATTTGTCAATATGGTCAGGCAAAGATCATTGAGACCGACAACTGTGGGCTTCACTGCTCGTTTGGCAGCCAAAATAAGAAGAGAAAAATCATAG 3594 41.01 MRTGNGKRKLRLSKIYSFACGRTSLKDEDHSQIGMPGFSRVVFCNDPDCLEVGMRNYVNNSIRSTKYTPINFLPKSLFEQFRRVANFYFLVAGILAFTPLAPFTAVSAIIPLIAVIIATMVKEGIEDWRRQAQDIEVNNRKVKVHQGNGFFDFTEWKTLRVGDIVKVEKDQYFPADLLLISSCYEDGICYVETMNLDGETNLKVKQALDATAFANEDSNFRNFKATIKCEDPNANLYTFVGSMDFEENQYPLSPQNLLLRDSKLRNTEYIYGVVVFTGQDSKVIQNSTDPPSKRSKVEKKMDKIIYLLFSILFMLAFIGSIVFGVVTKDDLKSGRTKRWYLRPDDSTIFFDPKNAPAAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGSGVTETERVMEGRNGMPMLNGNGNGNIYKHNEDATDTNPSVKGFNFKDKRIMNGNWVNEPHADVIQKFFRLLATCHTAIPDVDENTGKVSYEAESPDEAAFVIAAREIGFEFYQRTQTSISIRELDPRSGRKVERSYKLLNVLEFNSARKRMSVIIRDEEGKVLLLCKGADSVMFERLAKNASKFEEQTKEHINEYADAGLRTLVLAYRELDEEEYKEFDRKFYEAKNSVSAERESMIDKVTDRIERNLILLGSTAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGSIFIYARKREYKNISNFCVGTELKFQNVASKDSIVHKITRARSQITASSGSSEAYALIIDGKSLTYALEDDVKNAFLDLAIGCASVICCRSSPKQKAMVTKLVKLATGKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAWKALIMLFAVMSSDIAIAQFRYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTLFLYEAYSSFSGQPAYNDWFMSLYNVVFSSLPVVALGVFDQDVSARYCLKFPMLYQQGVQNVLFSWLRILGWMFNGLCSALIIFFFCTSGMQHQAFNPEGKTVGRDILGATMLSCVVWVVNLQMALSVSYFTLVQHIFIWASIFIWYLFLMIYGAFPASISTNAYRVFLEALAPAGSYWLLLIFVVISTLIPFFVYSALQLNFFPMYHEKIQWIRHDGQGQIDDPEFVNMVRQRSLRPTTVGFTARLAAKIRREKS 1197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17328856 17337962 + Lsi09G010910.1 Lsi09g01091 670704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01091 1197 Gene3D - 551 676 IPR023299 GO:0000166
Lsi09g01091 1197 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
Lsi09g01091 1197 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 1153 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Lsi09g01091 1197 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 9-RELATED 6 1195 - -
Lsi09g01091 1197 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1145 IPR023298 -
Lsi09g01091 1197 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 674 IPR023299 GO:0000166
Lsi09g01091 1197 SFLD p-type atpase 408 919 IPR044492 -
Lsi09g01091 1197 Gene3D - 699 905 IPR023214 -
Lsi09g01091 1197 SUPERFAMILY HAD-like 414 905 IPR036412 -
Lsi09g01091 1197 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Lsi09g01091 1197 PRINTS P-type cation-transporting ATPase superfamily signature 859 878 - -
Lsi09g01091 1197 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 825 951 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi09g01091 1197 SFLD Haloacid Dehalogenase 408 919 - -
Lsi09g01091 1197 Coils Coil 626 646 - -
Lsi09g01091 1197 Pfam Cation transport ATPase (P-type) 535 629 - -
Lsi09g01091 1197 Gene3D - 115 288 - -
Lsi09g01091 1197 CDD P-type_ATPase_APLT_Dnf-like 59 1028 - -
Lsi09g01091 1197 Pfam Phospholipid-translocating P-type ATPase C-terminal 896 1146 IPR032630 -
Lsi09g01091 1197 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 1195 - -
Lsi09g01091 1197 Pfam Phospholipid-translocating ATPase N-terminal 43 108 IPR032631 -
Lsi09g01091 1197 Pfam E1-E2 ATPase 140 381 - -
Lsi09g01091 1197 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00155 Lsi-Chr2:1273764 Lsi09g01091 Lsi-Chr9:17328856 0 dispersed
Lsi02g02923 Lsi-Chr2:35435123 Lsi09g01091 Lsi-Chr9:17328856 0 dispersed
Lsi04g00494 Lsi-Chr4:4565326 Lsi09g01091 Lsi-Chr9:17328856 2.64E-55 dispersed
Lsi04g00495 Lsi-Chr4:4582608 Lsi09g01091 Lsi-Chr9:17328856 0 dispersed
Lsi08g00624 Lsi-Chr8:14590144 Lsi09g01091 Lsi-Chr9:17328856 0 dispersed
Lsi09g01091 Lsi-Chr9:17328856 Lsi11g01706 Lsi-Chr11:25213447 2.79E-90 dispersed
Lsi09g01091 Lsi-Chr9:17328856 Lsi04g00308 Lsi-Chr4:3125165 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01091 K01530 - csv:101205800 2218.35