Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01112 ATGGTGAAGAAACGTGTGCCGGATTGGCTCAATAGCTCTCTTTGGTCCTCCACTCCCTCCGTCGACGACGATCGCCTCCACCGCTACACTTCCGAGCCGGCAGCCACCACTTCCGAGCCGGAACCCGTCGTCGAACCTCCTGTTCCGGTTCCTCCTCCGTCTGCGAGCACCGCCGTTCGAACCGAATCTCCTAAGTCTGACACAAGAGACTCCAGGGCTAATAACAATGTCACCAACGACGATAATGGCACTTCCTCAGGCCCTTCTGCTGAGGATGTATCTCGCCAGGCACAGCTTCTTGTTGAGTTGTCGAAGAAGATCATAAATCTGCGGGAATTGCGTAAAATTGCGTCTCAGGGCATACCGGATGGTCCAGGAATTCGTTCAACCGTCTGGAAACTCCTATTGGGTTATCTGCCACCAGATCGTGGGCTCTGGATGTCTGAGTTTGCTAAAAAGAGGTCTCAATACAAGCATTTTAAAGAAGAGCTTCTGATGAATCCTTCCGAAATTTCAAGGAGGTTGGAGAAGGCCAAAAGTTACGAGCATGATGAAACAAACAAGGGTCCACTCTCAAGGTCAGAAATAAGTCAAGAGGAGCATCCTTTGAGTCTTGGGAAAACCAGCATCTGGAATCAGTACTTCCAGGACTCTGAGATTATAGAACAGATTGATCGAGATGTGAAGCGTACTCATCCAGATATGCACTTCTTCTCTGGGGACTCATCACTTGCAAAATCTAATCAGGAGGCTCTGAGAAGCATTTTAATTGTTTTTGCGAAGTTGAATCCAGGAATTAGATATGTTCAGGGGATGAATGAACTTTTAGCTCCTCTATTCTATGTATTTAGAAGTGATCCTGATGAGGATAATGCGGCATCTGCTGAAGCAGACACGTTCTTTTGTTTTGTTGAGTTATTGAGTGGATTTAGGGATCATTTCTGCCAGCAATTGGATAATAGTGTTGTAGGAATTCGCGCCACAATCACAAAGTTGTCTCAACTTTTGAAGGAGCATGATGAAGAGCTCTGGCGTCACCTTGAGATCACAACCAAAGTAAACCCCCAGTTTTATGCATTTAGGTGGATCACTCTCCTGTTGACCCAAGAGTTCAATTTTGCAGACAGCCTTCACATATGGGATACAATTTTGAGTGATCCTGAGGGTCCTCTGATCCATGGCATTCTGGAGCAATGCATAAAATTTGAACCGTTCAGTAAAGAACTGTCGTATAAGAAAGACCTGACATATCGGACCACAAATTTTGGCACGTTGAACTATATGTCCGCTTTGGAGAGCTATTTCCTCATTCTGTTGATGAATTTCCTTATGGTAGTTATCATGCTTGTGCATATATCATGTAAGAGAGGTTGCACCCATAAATGCACGAGTATGTTGCGAAAACGTGCTCGAAGTTGTAGGAGAATTCTGCCATCACTTCTGTGCATACTTGATTATATTTTCTTGTTGACTTACACCGCCGTGATTCTTCATGAAACACTCCTCCGAATATGCTGCTCGATGTTGATTCTCATTAGACGACGCCTACTTGCAGGCGATTTCACGGCTAATCTCAAACTGCTCCAACACTATCCCCCAGCAAACATCAGTCATTTGCTCTACGTCGCAAACAAGTTGCGTAAACAACCTTCAATCTGA 1659 45.03 MVKKRVPDWLNSSLWSSTPSVDDDRLHRYTSEPAATTSEPEPVVEPPVPVPPPSASTAVRTESPKSDTRDSRANNNVTNDDNGTSSGPSAEDVSRQAQLLVELSKKIINLRELRKIASQGIPDGPGIRSTVWKLLLGYLPPDRGLWMSEFAKKRSQYKHFKEELLMNPSEISRRLEKAKSYEHDETNKGPLSRSEISQEEHPLSLGKTSIWNQYFQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQEALRSILIVFAKLNPGIRYVQGMNELLAPLFYVFRSDPDEDNAASAEADTFFCFVELLSGFRDHFCQQLDNSVVGIRATITKLSQLLKEHDEELWRHLEITTKVNPQFYAFRWITLLLTQEFNFADSLHIWDTILSDPEGPLIHGILEQCIKFEPFSKELSYKKDLTYRTTNFGTLNYMSALESYFLILLMNFLMVVIMLVHISCKRGCTHKCTSMLRKRARSCRRILPSLLCILDYIFLLTYTAVILHETLLRICCSMLILIRRRLLAGDFTANLKLLQHYPPANISHLLYVANKLRKQPSI 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17836340 17842292 + Lsi09G011120.1 Lsi09g01112 670725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01112 552 SMART tbc_4 117 410 IPR000195 -
Lsi09g01112 552 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 499 549 - -
Lsi09g01112 552 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 477 548 IPR035969 -
Lsi09g01112 552 Gene3D - 323 453 - -
Lsi09g01112 552 Gene3D - 470 551 - -
Lsi09g01112 552 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 3 391 - -
Lsi09g01112 552 MobiDBLite consensus disorder prediction 176 190 - -
Lsi09g01112 552 MobiDBLite consensus disorder prediction 70 93 - -
Lsi09g01112 552 MobiDBLite consensus disorder prediction 40 54 - -
Lsi09g01112 552 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 3 391 - -
Lsi09g01112 552 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 499 549 - -
Lsi09g01112 552 Gene3D - 91 145 - -
Lsi09g01112 552 ProSiteProfiles TBC/rab GAP domain profile. 122 387 IPR000195 -
Lsi09g01112 552 MobiDBLite consensus disorder prediction 176 201 - -
Lsi09g01112 552 Pfam Rab-GTPase-TBC domain 127 388 IPR000195 -
Lsi09g01112 552 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 324 393 IPR035969 -
Lsi09g01112 552 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 202 315 - -
Lsi09g01112 552 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 101 346 IPR035969 -
Lsi09g01112 552 MobiDBLite consensus disorder prediction 1 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01112 K24796 TBC1D13; TBC1 domain family member 13 - csv:101208456 743.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00354 Lsi-Chr7:3760589 Lsi09g01112 Lsi-Chr9:17836340 7.59E-26 dispersed
Lsi09g01112 Lsi-Chr9:17836340 Lsi11g00789 Lsi-Chr11:9203222 3.65E-09 dispersed
Lsi09g01112 Lsi-Chr9:17836340 Lsi09g00002 Lsi-Chr9:22908 4.72E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g999 . Blo12g00111 Bda03g01130 . Bpe04g01073 . . . . . Cma06g01698 . Car06g01440 . . . . . . . . . . . . . . . . . . . . . . . Csa02g00896 . . . . . . . . . . . . . . . . Car17g00072 Cpe12g00072 . Bhi12g01464 . . . Hepe03g0386 . . . . . . . . . Lsi09g01112 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004668 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01112 Lsi_Chr09 FPKM 9.281927 9.173105 52.893871 54.620068 5.579061 5.750568 5.456023 0.598805 0.427867 0.507142