Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01114 ATGGGAGACGTTTCAGGCGCCGCCGCCGCCGCCGGAACCAAGGCCACAAAGCTTCCGATTCCAGGAAAGAGGAATATTCTCATCACCAGCGCTCTTCCATACGTCAATAACGTTCCTCACCTCGGCAACATCATTGGCTGTGTGTTGAGTGCTGATGTTTTTGCTCGATACTGTCGTCTTAGAGGATATAACACTATTTACATATGCGGAACCGATGAGTATGGAACAGCGACGGAGACAAAAGCAATGGAAGAGAAATGCTCTCCTAAAGAGATTTGCGACAAGTATCACGCAATTCACAAAGAAGTTTATAATTGGTTTGGTATTAGTTTTGATGAGTTTGGGCGTACATCATCGCCACAGCAGACTGAAGTTTGTCAAGCAATATTTGGCAAACTATTGGAGAACAATTGGCTTTCTGAGAACACGATGCAACAGCTGTACTGTGATACCTGTGAGAGATTTTTAGCCGATCGGCTCGTTGAAGGCATATGCCCTACTCCAGGTTGTGAGTATGACTCTGCACGTGGTGATCAGTGTGAGAAGTGCGGGAAACTTCTAAATCCAACTGAATTGAAAGACCCTAGGCTCTTCTTCTCCTTTCAAATCAAACAATACCGGTCGCCTCTTAACTCTCGACGAAAGGTAGAGATTGTCTGTCAAACAACCCCACGTATCCGTGACACAAACCACATGTTTCTTGAGCTTCCTTTGCTGAGAGAGAAACTGGAAGAATATATCAACAAGATGTCTGTGGCTGGATCTTGGAGCCAAAATGCTATTCAAGCAACACATGCTTGGCTTAAGGAAGGGTTGAAACCCCGGTGTATTACAAGAGATCTAAAGTGGGGGGTTCCCGTTCCACTTGAAAGGTTCAAGGAAAAGGTCTTCTATGTCTGGTTTGATGCACCGATAGGATATGTCTCCATTACATCATGCTACACAAATGAATGGGAGAAATGGTGGAAGAATCCAGAAAATGTGGAGCTTTTTCAATTTATGGGAAAGGATAATGTGCCTTTCCACACGGTTATGTTTCCTTCTACTCTTCTTGGAACTGGAGAAGACTGGACCTTGATGAAAACCATTAGTGTTACGGAATATTTAAACTATGAAGCAGGGAAATTTTCTAAAAGTAAGGGCATAGGAGTTTTTGGTAATGATGCAAAAGATACAAATATTCCTGTAGAAGTATGGAGATATTACTTATTAGCCAATAGGCCTGAGGTTTCAGATACATTATTTACATGGTCTGATTTACAAGCAAAACTTAATGGCGAGTTGTTGAACAATTTGGGCAACTTCATTCATCGAGTTATGAGCTTCATTGCCAAACCTTTAGGGCAGGGTTATGGTTCCATTATTCCTGATGCTCCTGACGTGGACTCTCATGAATTAACATTGGGTTTGGCTGAGAAAGTTGGTAAATACGTAGACCAATATGTGGAGTCAATGGAGAAGGTTAAACTAAAACAAGGTCTGAAAGCTGCAATGGCTATCTCAAGCGAGGGAAATATATATTTGCAAACAGCACAGTTCTGGAATCTTTACAAGGCGGACAAACCTTCCTGCAATATTGTCATGAGAACCTCAGCTGGACTAGTACATCTTCTAGCATGTTTATTAGAACCTTTCATTCCTTCTTTCTCACTGGAGGTGTTTAGGCAGCTGGATTTACCTCCGGAACAACATATTTCACTTTGTGAAGAAAAAGGAGACATCGAGAGAGCAAAACAACCTTGGAAAATCCTACCTTCTGGTCATAAGATTGGCACACCAGAGCCACTATTCAAAGAATTGAAAGATGAAGAAGTAGAACTATACAGGGACAAGTTTGCTGGTAGTCAGGCTCAACGCATTGTGAGAGCAGAGGCTGAAGCAGAAAAGCTTGCTGCTCAGCTAAAAAAAACTAAGGTCTCAGACATGTATTGGAGTCAGATGGGCAATGGAAAAAAGCAACAGGCAAAATCCACAGGCAGCAAACCAAAAACTGCTGTGGAACAAGAAATTACAATTACGAGACTGGATATCCGTGTTGGGTTAATTACGAAAGCTCAGAAGCATCCAGATGCTGATTCCTTATATGTCGAAGAAATCGATGTGGGAGAATCTCAACCTCGAACCGTTGTCAGTGGATTGGTCAAGTACATACCTCTTGAAGAGATGCAGAACCGGAAGGTGTGTGTTCTTTGCAACTTGAAGCCGGCAGCCATGAGGGGCATTAAATCTCAAGCCATGGTTCTTGCTGCTTCCAATAGCGACCATACCAAGGTCGAGTTAGTCGAGCCACCTAAAGACGCCAATGTCGGAGAAAGAATTAAATTTGCAGGATTCGAAGGTGAGCCCGACGATGTATTGAACCCGAAGAAGAAGGTATGGGAGACGCTGCAGGTAGATTTGGCTACTAACACAGACAAGGTGGCATGTTTTAAAGATATACCATTTACAACATCAGCTGGTATTTGCAAAGTTTCTTCCATTTCTAGTGGTTCTATCAGGTAG 2502 42.77 MGDVSGAAAAAGTKATKLPIPGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNTIYICGTDEYGTATETKAMEEKCSPKEICDKYHAIHKEVYNWFGISFDEFGRTSSPQQTEVCQAIFGKLLENNWLSENTMQQLYCDTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELKDPRLFFSFQIKQYRSPLNSRRKVEIVCQTTPRIRDTNHMFLELPLLREKLEEYINKMSVAGSWSQNAIQATHAWLKEGLKPRCITRDLKWGVPVPLERFKEKVFYVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWSDLQAKLNGELLNNLGNFIHRVMSFIAKPLGQGYGSIIPDAPDVDSHELTLGLAEKVGKYVDQYVESMEKVKLKQGLKAAMAISSEGNIYLQTAQFWNLYKADKPSCNIVMRTSAGLVHLLACLLEPFIPSFSLEVFRQLDLPPEQHISLCEEKGDIERAKQPWKILPSGHKIGTPEPLFKELKDEEVELYRDKFAGSQAQRIVRAEAEAEKLAAQLKKTKVSDMYWSQMGNGKKQQAKSTGSKPKTAVEQEITITRLDIRVGLITKAQKHPDADSLYVEEIDVGESQPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPAAMRGIKSQAMVLAASNSDHTKVELVEPPKDANVGERIKFAGFEGEPDDVLNPKKKVWETLQVDLATNTDKVACFKDIPFTTSAGICKVSSISSGSIR 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17850749 17865194 - Lsi09G011140.1 Lsi09g01114 670727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01114 833 Coils Coil 620 640 - -
Lsi09g01114 833 PANTHER METHIONINE--TRNA LIGASE CYTOPLASMIC 8 833 - -
Lsi09g01114 833 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 161 196 IPR029038 -
Lsi09g01114 833 PRINTS Methionyl-tRNA synthetase signature 61 75 IPR033911 GO:0004825|GO:0006431
Lsi09g01114 833 PRINTS Methionyl-tRNA synthetase signature 332 347 IPR033911 GO:0004825|GO:0006431
Lsi09g01114 833 PRINTS Methionyl-tRNA synthetase signature 28 41 IPR033911 GO:0004825|GO:0006431
Lsi09g01114 833 PRINTS Methionyl-tRNA synthetase signature 109 120 IPR033911 GO:0004825|GO:0006431
Lsi09g01114 833 PRINTS Methionyl-tRNA synthetase signature 427 438 IPR033911 GO:0004825|GO:0006431
Lsi09g01114 833 PANTHER METHIONINE--TRNA LIGASE 8 833 IPR023458 GO:0004825
Lsi09g01114 833 TIGRFAM metG: methionine--tRNA ligase 26 582 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Lsi09g01114 833 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 33 44 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lsi09g01114 833 CDD MetRS_core 25 415 IPR033911 GO:0004825|GO:0006431
Lsi09g01114 833 Gene3D - 670 833 IPR012340 -
Lsi09g01114 833 Pfam Anticodon binding domain of methionyl tRNA ligase 469 616 IPR041872 -
Lsi09g01114 833 Gene3D - 429 599 - -
Lsi09g01114 833 CDD Anticodon_Ia_Met 424 557 IPR041872 -
Lsi09g01114 833 SUPERFAMILY Nucleotidylyl transferase 23 425 - -
Lsi09g01114 833 Pfam tRNA synthetases class I (M) 26 440 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lsi09g01114 833 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 432 612 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lsi09g01114 833 Gene3D - 161 217 IPR029038 -
Lsi09g01114 833 CDD tRNA_bind_EMAP-II_like 670 773 - -
Lsi09g01114 833 Pfam Putative tRNA binding domain 677 771 IPR002547 GO:0000049
Lsi09g01114 833 ProSiteProfiles tRNA-binding domain profile. 671 774 IPR002547 GO:0000049
Lsi09g01114 833 Gene3D HUPs 25 428 IPR014729 -
Lsi09g01114 833 SUPERFAMILY Nucleic acid-binding proteins 672 831 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01114 K01874 MARS, metG; methionyl-tRNA synthetase [EC:6.1.1.10] - csv:101208697 1507.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02008 Lsi-Chr1:27387267 Lsi09g01114 Lsi-Chr9:17850749 5.03E-40 dispersed
Lsi02g01659 Lsi-Chr2:22376342 Lsi09g01114 Lsi-Chr9:17850749 3.46E-39 dispersed
Lsi04g01016 Lsi-Chr4:11485934 Lsi09g01114 Lsi-Chr9:17850749 3.70E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g991 . Blo12g00110 Bda03g01132 . Bpe04g01075 . Bma04g01170 . . Cmo17g00087 . . . . . . . . . . . . . . Cla06g00784 Cam06g0838 Cec06g0853 Cco06g0867 Clacu06g0841 Cmu06g0813 Cre06g1593 . . . . . Csa02g00898 . . . . . . . . . . . . . . Cma17g00080 . Car17g00074 Cpe12g00074 . Bhi12g01467 . . . . . . . . . . . . . Lsi09g01114 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003190 3 1 3 3 3 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 2 2 1 3 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01114 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.510861 0.0 0.0 0.0