Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01120 ATGGTGATTTCGTCTGATAATGTTCGTGGGTTTCTTCTTGCTGTTTCTTCCAGCGTCTTTATTGGGTCTAGTACTATTATCAAGAAGAAAGGTCTCATCAAATCAGGGACTGCTGGAACCAGAGCAGTGATTGTTGGGGAGACTGCTAACTTCGTTGCTTATGCATATGCTCCTGCGATTCTTGTCACTCCCTTGGGAGCTTTGAGCATTATTTTCAGTGCAGTTCTAGCTCACTTTATGTTGAAGGAAAAGTTGCATATCTTTGGAGTTCTTGGTTGTGTTCTCTGTGTTGTGGGTTCTACAACTATTGTTTTGCATGCTCCACTGGAAAAAAAGATTGAATCTGTTAAGGAAGTATGGCATCTTGCTACAGAGCCAGTTTTCGTATTTTTCTTCAGGGTAGCTATTGCTGCCAAGTTGACATTGGAAGGAATGAATCAATTCAAGTACTTTGAGACATGGTTCTTCACTGTGTTTGTGATTGGCTGTTGTATTTTGCAGGTGATCTACTTGAACAAGGCTCTTGATGCTTTCAACTCCGTTGTTATATCTCCAGTTTACTATGTAACGTTCACAACTTTTACCATCCTTGCCAGTATGATTATGTTTAAGAATTGGGACACACAAAGTGCAACTCAAATTGCAACTGAAGTTTGTGGATTCATCACCATTCTTTCTGGGACCTTCCTTCTCCACAAAACCAAGGATATGGGAAAAGGTCCTTCCACTGAACCCCCTCTCTTCCAAACCCAAAACCATCCTCATGAAAATCAAAATCTAAATAGCACTAGAACACTATAG 801 40.45 MVISSDNVRGFLLAVSSSVFIGSSTIIKKKGLIKSGTAGTRAVIVGETANFVAYAYAPAILVTPLGALSIIFSAVLAHFMLKEKLHIFGVLGCVLCVVGSTTIVLHAPLEKKIESVKEVWHLATEPVFVFFFRVAIAAKLTLEGMNQFKYFETWFFTVFVIGCCILQVIYLNKALDAFNSVVISPVYYVTFTTFTILASMIMFKNWDTQSATQIATEVCGFITILSGTFLLHKTKDMGKGPSTEPPLFQTQNHPHENQNLNSTRTL 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17914588 17920148 - Lsi09G011200.1 Lsi09g01120 670733

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01120 266 Pfam Magnesium transporter NIPA 6 136 IPR008521 GO:0015095|GO:0015693|GO:0016021
Lsi09g01120 266 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 106 - -
Lsi09g01120 266 PANTHER UNCHARACTERIZED 1 135 IPR008521 GO:0015095|GO:0015693|GO:0016021
Lsi09g01120 266 PANTHER UNCHARACTERIZED 134 254 IPR008521 GO:0015095|GO:0015693|GO:0016021
Lsi09g01120 266 PANTHER MAGNESIUM TRANSPORTER NIPA1-RELATED 1 135 - -
Lsi09g01120 266 PANTHER MAGNESIUM TRANSPORTER NIPA1-RELATED 134 254 - -
Lsi09g01120 266 MobiDBLite consensus disorder prediction 236 266 - -
Lsi09g01120 266 MobiDBLite consensus disorder prediction 244 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01120 K22733 NIPA, SLC57A2S; magnesium transporter - csv:101209432 436.802
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01856 Lsi09g01120 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01120 Lsi-Chr9:17914588 Lsi11g01183 Lsi-Chr11:20318328 2.48E-77 dispersed
Lsi05g01856 Lsi-Chr5:25796427 Lsi09g01120 Lsi-Chr9:17914588 5.96E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g940 . Blo12g00105 Bda03g01137 . Bpe04g01080 . . . . . . . Car06g01056 Car14g01706 Sed02g1524 Cpe08g00410 Cpe03g01606 Bhi01g00201 Tan10g0500 Cmetu06g1928 Lac12g1917 Hepe05g1774 . Lcy11g1789 Cla06g00779 Cam06g0833 Cec06g0848 Cco06g0858 Clacu06g0836 Cmu06g0807 Cre06g1588 . . . . Lsi05g01856 Csa02g00902 . Cme06g00369 . . Bda11g00339 . . . . . . Cmo06g01241 Cmo14g01960 . . . . . . Bhi12g01473 Tan06g2276 . . . . . Cla05g00333 Cam05g0365 Cec05g0369 Cco05g0370 Clacu05g0360 Cmu05g0345 Cre05g0409 Lsi09g01120 Csa03g01081 Chy06g00350 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000165 6 10 5 4 5 5 8 5 6 6 6 5 4 5 6 7 5 7 8 5 6 6 6 5 5 6 6 21 17 4 200
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01120 Lsi_Chr09 FPKM 4.383966 5.30721 62.358665 67.90374 13.658522 14.90153 15.554169 45.865646 44.846676 49.221592