Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01131 ATGGTGGCGGAAGGAAGAATCCAATCCGCCAATTTGCTGCAAGGATTTCGATTCGGATCCAAGAATTTGGTTTCATCAATGGCGGGCCTATCGCTCAAGTGCGGGGATTGTGGCGCTCTCTTGAGATCCGTAGAAGAAGCTCAACAACATGCCGAACTCACTTCTCACTCCAACTTCTCCGAGTCCACCGAAGCTGTCCTCAATCTCGTCTGCACTGCCTGCGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAAAGGACCGGCCATACCGAGTTTGCTGATAAGACTTTGGAGGCTGCGAAACCAATAAGTTTGGAGGCCCCAAAGGTAGATGCGGAATCAGAAGATGGTGGGGATGCAAGTGCTAGCAAGTCTGAAGAAATGGTTGTGCCAGAGGTGAACAAGAATATATTAGAGGAACTTGAATCTATGGGCTTTCCAACAGCACGAGCAACCCGTGCACTCTTTTATTCTGGTAATGCCAGTCTTGAGGCTGCAGTCAATTGGGTAGTTGAACATGAGAATGATCCAGAGATAGATCAGATGCCTTTGGTACAAGTTCCTAAGGACACAAATGTTGAGGCTCCAAAGCCTTCTCTTACACCTGAGCAATTGAAAGCAAAGCAGCAGGAGCTAAGGGAACGGGCTCGAAAGAAAAAAGAGGAGGAAGAGAAGATAGCGGAGAGAGAAAGGGAAAAGGAGAGAATTCGAATTGGCAAGGAGCTCTTAGAAGCAAAAAGGATCGAGGAAGAAAATGAGAGAAAAAGAATATTAGCCTTGAGAAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGACAAAATTCGTCAAAAACTTGAAGAGGACAAGGCAGAAAGAAGACGGAGGCTTGGATTGCCACCAGAAGATCCTTCAACTGCAAAACCTCCGGCACCTGTTGTTGAGGAGAAAAAGATCTCATTACCGGTTAGACCTGCTTCAAAGGCAGAGCAAATGAGAGAATGTTTGCGATCATTAAAGTCCAATCACAAGGAGGATGATGCTAAAGTGAAGAGAGCGTTTCAAACCCTTCTGACGTATGTGGGAAATGTGGCAAAAAATCCCGATGAAGAGAAATTCAGAAAAATTAGACTTAGCAACCAAACTTTCCAGGATAGAGTGGGTGCCCTGAGAGGAGGAATTGAGTTTCTAGAGCTGTGTGGGTTCGAGAAAATTGAAGGTGGCGAGTTCTTGTTTCTGCCCAGAAATAAGGTTGACAGGGCAGTGCTCAATTCAGCTGGCTCTGAGCTCGACTCTGCTATAAAGAATCCCTTCTTTGGCCCAAGGCTCGCTTTTTTCAGTTCAACGTCTTCTTCATCATCACCTCAGATTTCATCTCTCGAAACCCATTTCATCGATCTAATTCATGCTTCCAATTCGACCTACAACCTCCGTCAGATCCATGGTCAACTCTACCGCTGCAACATCTTCTCCAGCAGCCGGGTTGTGACCCAGTTCATCTCTTCCTGTTCGTCGCTAAATTCTGTCGACTATGCCGTCTCGATCTTTCAGCGGTTCGAGTTGAAGAACAGTTTCCTTTTTAATGCGTTGATTCGAGGACTTGCTGAAAATTCCAGGTTCGAGAGCTCAATTTCTCACTTTATTTTAATGTTGAAGTGGAAAATTAGCCCTGATAGGCTTACTTTTCCGTTTGTGCTCAAATCAGCGGCGGCTCTTTCCAATGGTGGCGTTGGGAGGGCTTTGCATTGTGGGATTTTGAAGTTTGGTCTTGAGTTTGATTCTTTTGTGAGGGTTTCGTTGGTGGATATGTACGTGAAAGTTGAGGATTTGGGTTCTGCCTTGAAGGTGTTTGATGAAAGTCCTGCGAGTGTTAAGACTGGAAGTGTGTTGATTTGGAATGTTCTTATTAATGGGTATTGTAGAGTGGGGGATTTAATAAAAGCTAGGGACCTATTCGAGTCAATGCCGAAGAAGGATACGGGATCTTGGAATAGTTTGATCAATGGTTTCATGAGAAAGGGGGACTTGGGTCGAGCAAAGGAACTGTTTGAGAAAATGCCCGGAAAAAATGTTGTTTCTTGGACTACAATGGTGAATGGATTTTCACAGAATGGAGACCCTGAAAAGGCACTGGAAACTTTCTTTTGTATGCTTGAAGAAGGCGCACGGCCGAATGATTACACAATTGTCTCTGCACTTTCAGCTTGTGCAAAAGTTGGTGCCTTAGATGCTGGAACAAAGCCAGATGGTGTGGTCTTTCTTGCTGTTCTTACTGCATGCTCCCATTCTGGACAAGTAAACGATGGACTTGAGTTTTTTGACAGTATGAGACACGACTACTCGATTGAGCCTTCTATGAAGCATTACACACTGGTTGTAGACATGCTAGGCAGGGCTGGTAGACTAAATGAAGCTCTAAAGTTCATACGTGACATGCCCATAAAGCCTGATTTTGTGGTGTGGGGTGCTCTATTTTGTGCTTGTAGGACTCATAAGAACATTGAAATGGCAGAACTAGCATCCAAAAAGCTTCTTCAGCTTGAACCCAAGCATCCGGGGAGTTATGTGTTTTTGTCGAACGCATATGCTGCCGTAGGGAGATGGGAAGATGCAGAGAGAGTGAGAGTTTCTATGCGTGATCGCGGTGCACAAAAAGATCCTGGATGGAGCTTTATTGAAGTGGATGATAAATTACATAGATTTGTGGCCGGTGATAACACTCATAACCGTGCTGTGGAGATATACTCGAAATTAGATGAGATAAGTGCAGGTGCTAGGGAAAAAGGATACACAAAAGAAATTGAGTGTGTACTTCATAATATTGAAGAGGAAGAAAAGGAAGAAGCATTGGGATATCACAGCGAGAAGTTGGCACTTGCTTTCGGGCTTGTTAGTACGGACCCCGGAACGACCGTTAGGATAGTGAAAAACCTTAGAGTTTGTGTGGATTGTCATTCTTTCATGAAATATGCCAGTAAAATGAGTCAGAGGGAGATCATTTTGAGGGATATGAAGCGATTCCATCATTTTAATGATGGTGTTTGTTCATGTGGAGATTATTGGTAA 3057 44.39 MVAEGRIQSANLLQGFRFGSKNLVSSMAGLSLKCGDCGALLRSVEEAQQHAELTSHSNFSESTEAVLNLVCTACGKPCRSKTESDLHTKRTGHTEFADKTLEAAKPISLEAPKVDAESEDGGDASASKSEEMVVPEVNKNILEELESMGFPTARATRALFYSGNASLEAAVNWVVEHENDPEIDQMPLVQVPKDTNVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKIAEREREKERIRIGKELLEAKRIEEENERKRILALRKAEKEEEKRARDKIRQKLEEDKAERRRRLGLPPEDPSTAKPPAPVVEEKKISLPVRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVAKNPDEEKFRKIRLSNQTFQDRVGALRGGIEFLELCGFEKIEGGEFLFLPRNKVDRAVLNSAGSELDSAIKNPFFGPRLAFFSSTSSSSSPQISSLETHFIDLIHASNSTYNLRQIHGQLYRCNIFSSSRVVTQFISSCSSLNSVDYAVSIFQRFELKNSFLFNALIRGLAENSRFESSISHFILMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEDLGSALKVFDESPASVKTGSVLIWNVLINGYCRVGDLIKARDLFESMPKKDTGSWNSLINGFMRKGDLGRAKELFEKMPGKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKVGALDAGTKPDGVVFLAVLTACSHSGQVNDGLEFFDSMRHDYSIEPSMKHYTLVVDMLGRAGRLNEALKFIRDMPIKPDFVVWGALFCACRTHKNIEMAELASKKLLQLEPKHPGSYVFLSNAYAAVGRWEDAERVRVSMRDRGAQKDPGWSFIEVDDKLHRFVAGDNTHNRAVEIYSKLDEISAGAREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGLVSTDPGTTVRIVKNLRVCVDCHSFMKYASKMSQREIILRDMKRFHHFNDGVCSCGDYW 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18185013 18206441 - Lsi09G011310.1 Lsi09g01131 670744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01131 1018 Gene3D - 332 429 - -
Lsi09g01131 1018 PANTHER OS07G0578800 PROTEIN-RELATED 741 1001 IPR045215 GO:0003723|GO:0009451
Lsi09g01131 1018 PANTHER OS07G0578800 PROTEIN-RELATED 446 744 IPR045215 GO:0003723|GO:0009451
Lsi09g01131 1018 CDD PUB_UBA_plant 333 437 - -
Lsi09g01131 1018 MobiDBLite consensus disorder prediction 112 126 - -
Lsi09g01131 1018 ProSitePatterns Zinc finger C2H2 type domain signature. 71 93 IPR013087 -
Lsi09g01131 1018 MobiDBLite consensus disorder prediction 267 308 - -
Lsi09g01131 1018 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 625 659 IPR002885 -
Lsi09g01131 1018 Gene3D - 139 183 - -
Lsi09g01131 1018 Pfam PPR repeat 656 683 IPR002885 -
Lsi09g01131 1018 Pfam UBA/TS-N domain 142 173 IPR015940 -
Lsi09g01131 1018 SMART PGNneu 349 412 - -
Lsi09g01131 1018 Pfam DYW family of nucleic acid deaminases 926 1018 IPR032867 GO:0008270
Lsi09g01131 1018 SUPERFAMILY PUG domain-like 325 439 IPR036339 -
Lsi09g01131 1018 SUPERFAMILY TPR-like 667 869 IPR011990 GO:0005515
Lsi09g01131 1018 MobiDBLite consensus disorder prediction 107 132 - -
Lsi09g01131 1018 Gene3D Tetratricopeptide repeat domain 656 741 IPR011990 GO:0005515
Lsi09g01131 1018 Gene3D Tetratricopeptide repeat domain 575 655 IPR011990 GO:0005515
Lsi09g01131 1018 Pfam PPR repeat 523 550 IPR002885 -
Lsi09g01131 1018 Pfam PPR repeat 785 809 IPR002885 -
Lsi09g01131 1018 Pfam PPR repeat 628 655 IPR002885 -
Lsi09g01131 1018 Pfam PPR repeat 748 775 IPR002885 -
Lsi09g01131 1018 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Lsi09g01131 1018 Gene3D Tetratricopeptide repeat domain 742 945 IPR011990 GO:0005515
Lsi09g01131 1018 MobiDBLite consensus disorder prediction 211 235 - -
Lsi09g01131 1018 Gene3D Tetratricopeptide repeat domain 475 574 IPR011990 GO:0005515
Lsi09g01131 1018 TIGRFAM PPR: pentatricopeptide repeat domain 628 655 IPR002885 -
Lsi09g01131 1018 TIGRFAM PPR: pentatricopeptide repeat domain 689 722 IPR002885 -
Lsi09g01131 1018 TIGRFAM PPR: pentatricopeptide repeat domain 659 688 IPR002885 -
Lsi09g01131 1018 SUPERFAMILY UBA-like 123 188 IPR009060 GO:0005515
Lsi09g01131 1018 Coils Coil 209 243 - -
Lsi09g01131 1018 CDD UBA_PUB_plant 136 184 - -
Lsi09g01131 1018 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 136 177 IPR015940 -
Lsi09g01131 1018 PANTHER TETRATRICOPEPTIDE REPEAT-LIKE SUPERFAMILY PROTEIN ISOFORM 1 741 1001 - -
Lsi09g01131 1018 MobiDBLite consensus disorder prediction 267 298 - -
Lsi09g01131 1018 SMART uba_6 138 176 IPR015940 -
Lsi09g01131 1018 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 687 721 IPR002885 -
Lsi09g01131 1018 PANTHER TETRATRICOPEPTIDE REPEAT-LIKE SUPERFAMILY PROTEIN ISOFORM 1 446 744 - -
Lsi09g01131 1018 MobiDBLite consensus disorder prediction 195 235 - -
Lsi09g01131 1018 Pfam PPR repeat family 686 735 IPR002885 -
Lsi09g01131 1018 ProSitePatterns Zinc finger C2H2 type domain signature. 34 56 IPR013087 -
Lsi09g01131 1018 Pfam E motif 828 890 IPR046848 -
Lsi09g01131 1018 Pfam PUB domain 346 417 IPR018997 -
Lsi09g01131 1018 Coils Coil 252 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01131 Lsi-Chr9:18185013 Lsi01g00939 Lsi-Chr1:7596616 1.17E-128 dispersed
Lsi11g00727 Lsi-Chr11:7908560 Lsi09g01131 Lsi-Chr9:18185013 5.38E-83 dispersed
Lsi09g01131 Lsi-Chr9:18185013 Lsi08g01196 Lsi-Chr8:20533459 1.52E-133 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01131 K24348 - csv:101206850 955.666