Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01132 ATGGGTAAAGAGAAGATTCACATCAACATCGTGGTTATTGGCCATGTCGACTCTGGAAAGTCGACCACCACTGGTCATCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATCGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCAGAGCGTGAACGTGGTATTACCATTGACATTGCTCTGTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGAACTTCACAGGCTGACTGTGCTGTCCTCATTATTGATTCCACCACTGGTGGTTTTGAGGCTGGTATTTCCAAGGATGGTCAGACCCGTGAGCACGCTCTTCTTGCTTTCACCCTCGGTGTCAAGCAAATGATCTGTTGCTGCAACAAGATGGATGCCACCACCCCCAAATACTCCAAGGCAAGGTACGATGAAATCGTTAAGGAAGTGTCATCTTACCTCAAGAAGGTCGGTTACAACCCAGAAAAAATCCCCTTCGTCCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGATTGGTACAAGGGACCAACCCTTCTTGAGGCTCTTGACTTGATCTCTGAGCCCAAGAGGCCCTCGGACAAGCCCCTCCGTCTCCCACTTCAGGACGTTTACAAGATTGGTGGTATTGGAACTGTCCCTGTTGGACGTGTTGAAACTGGTGTCCTCAAGCCTGGTATGGTTGTTACCTTCGGACCAACTGGACTCACCACTGAAGTTAAGTCTGTTGAAATGCACCACGAGTCTCTTCCAGAGGCCTTGCCCGGTGACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACATCCCAGGTCATCATCATGAACCACCCTGGCCAGATCGGTAACGGTTATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCTGTTAAGTTTGCTGAGATCCTCACCAAGATTGATCGTCGATCTGGTAAGGAGCTCGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCCGGTATGGTGAAGATGGTTCCGACCAAGCCAATGGTTGTGGAGACCTTCTCTTCATACCCACCATTGGGTCGTTTTGCTGTTCGTGATATGCGTCAAACCGTTGCTGTTGGTGTGATCAAGAGTGTGGAGAAGAAGGACCCAACAGGAGCCAAGGTCACCAAATCCGCTGTCAAGAAGAAATAA 1344 49.18 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18223748 18226742 + Lsi09G011320.1 Lsi09g01132 670745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01132 447 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Lsi09g01132 447 Gene3D Translation factors 229 316 - -
Lsi09g01132 447 PANTHER TRANSLATION FACTOR 1 446 - -
Lsi09g01132 447 Gene3D - 1 228 IPR027417 -
Lsi09g01132 447 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Lsi09g01132 447 CDD EF1_alpha_II 230 320 - -
Lsi09g01132 447 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Lsi09g01132 447 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Lsi09g01132 447 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Lsi09g01132 447 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Lsi09g01132 447 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Lsi09g01132 447 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Lsi09g01132 447 Pfam Elongation factor Tu GTP binding domain 7 221 IPR000795 GO:0003924|GO:0005525
Lsi09g01132 447 Gene3D Translation factors 323 430 - -
Lsi09g01132 447 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Lsi09g01132 447 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lsi09g01132 447 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 446 - -
Lsi09g01132 447 CDD EF1_alpha_III 323 426 - -
Lsi09g01132 447 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Lsi09g01132 447 CDD EF1_alpha 9 227 - -
Lsi09g01132 447 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Lsi09g01132 447 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lsi09g01132 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02185 Lsi-Chr4:28922951 Lsi09g01132 Lsi-Chr9:18223748 3.39E-93 dispersed
Lsi06g01592 Lsi-Chr6:26309646 Lsi09g01132 Lsi-Chr9:18223748 2.82E-46 dispersed
Lsi09g01132 Lsi-Chr9:18223748 Lsi11g01419 Lsi-Chr11:22732132 4.60E-11 dispersed
Lsi09g01132 Lsi-Chr9:18223748 Lsi10g01288 Lsi-Chr10:17113450 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01132 K03231 - csv:101215193 885.174