Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01138 ATGGGGCCGTTTAAGCCTGTGACTGTCCCGCTTGATAAGAGCTTCCGGGGGTTGGCCGAGGACTTGCCGGAAACTGATCCGAGAGTTCAGAAAAATGGGGGTCAGTTTGCGCCGGAACAGATTTCTGTCTCTCTCTCTGCAGATTATGACTCCGTTTGGATTTCTTGGATAGCAGGGGACTTTCAAATTGGAGACGACATTCAACCACTAGATCCTGAAAGAGTTGCGAGTATTGTCATGTATGGGAAGTTCAGAATGCCAATGAATAACCAAGCAGAGGGTTATTCTCTTATCTACAATCAACTTTATCCCTTTGAAGGCCTCAGGAACTACACATCTGGAATTATACACCATGTTCGTCTAACGGGATTGGAGCCTGATACTTTGTACCAATATCAGTGTGGAGACCCTTCAGTTGCAGAAGAAATGAGTGATGTATTTTATTTCAGAACCATGCCTGTTTCTGGGCCTAGGAGTTATCCTAATAGAATAGCAGTGGTTGGTGATTTGGGTCTTACATACAATACTACATCAACAGTTAATAATATTTTGAGTAACCATCCCGACCTTGTTCTATTGATTGGGGATGTGAGTTATGCCAACTTATATCTTACAAATGGCACTGGCTCTGATTGTTACTCTTGTTCTTTTCCTGAAACTCCTATTCATGAAACTTATCAGCCTCGTTGGGATTACTGGGGAAGGTATATGCAGCCTCTAGTATCCAAAGTTCCATTGATGGTGGTGGAAGGGAACCATGAAATAGAACCACAAGCTGAAAATCAAACATTTGCAGCTTATAGTTCCCGATTTGCATTCCCATCCAAAGAGAGTAACTCATCTTCGACGTTTTACTACTCTTTCAATGCAGGTGATCAATACAAATGGCTAGAGCAAGACCTGGCAAAAGTTGACAGGAAAGTTACTCCATGGTTGATAGCTACATGGCACCCACCCTGGTACAGCACCTACACTGCTCATTATAGAGAAGCAGAGTGCATGAAAGTGGCAATGGAAGACTTGCTCTACAAGTATAAAGTTGACATAGTTTTCAACGGTCATGTTCATGCCTATGAGAGGTCAAATAGAGTATATAACTACACTTTGGATCGTTGTGGTCCTGTCCATATAACAGTAGGCGATGGAGGTAACCGAGAGAAAATGGCAATTGAACATGCTGATGAACCTGGAAACTGTCCAGACCCAGCCTTGACACCGGATGAATACATGGGCGGCTTCTGTGCATTCAATTTCACATCGGGTCCAGCTGAAGGAAAATTCTGCTGGGATCAGCAACCTGAATATAGTGCATATCGTGAAAGTAGTTTCGGCCATGGCATTTTGGAGGTGAAAAACGAAACTCATGCGTTGTGGACTTGGCATCGAAACCAGGACTCGTATAAATCGGTTGGGGATATAATATACATCGTACGACAACCAGAAATTTGTCTAATTGAGCAGAAGGTACATACATACAGACATGGAAAACAAGAAGATATGTGA 1503 42.91 MGPFKPVTVPLDKSFRGLAEDLPETDPRVQKNGGQFAPEQISVSLSADYDSVWISWIAGDFQIGDDIQPLDPERVASIVMYGKFRMPMNNQAEGYSLIYNQLYPFEGLRNYTSGIIHHVRLTGLEPDTLYQYQCGDPSVAEEMSDVFYFRTMPVSGPRSYPNRIAVVGDLGLTYNTTSTVNNILSNHPDLVLLIGDVSYANLYLTNGTGSDCYSCSFPETPIHETYQPRWDYWGRYMQPLVSKVPLMVVEGNHEIEPQAENQTFAAYSSRFAFPSKESNSSSTFYYSFNAGDQYKWLEQDLAKVDRKVTPWLIATWHPPWYSTYTAHYREAECMKVAMEDLLYKYKVDIVFNGHVHAYERSNRVYNYTLDRCGPVHITVGDGGNREKMAIEHADEPGNCPDPALTPDEYMGGFCAFNFTSGPAEGKFCWDQQPEYSAYRESSFGHGILEVKNETHALWTWHRNQDSYKSVGDIIYIVRQPEICLIEQKVHTYRHGKQEDM 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18274317 18278516 + Lsi09G011380.1 Lsi09g01138 670751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01138 500 Pfam Purple acid Phosphatase, N-terminal domain 38 151 IPR015914 GO:0003993|GO:0046872
Lsi09g01138 500 Gene3D - 37 154 - -
Lsi09g01138 500 SUPERFAMILY Metallo-dependent phosphatases 163 467 IPR029052 -
Lsi09g01138 500 Pfam Calcineurin-like phosphoesterase 163 358 IPR004843 GO:0016787
Lsi09g01138 500 Pfam Iron/zinc purple acid phosphatase-like protein C 424 469 IPR025733 -
Lsi09g01138 500 PANTHER PURPLE ACID PHOSPHATASE 15 2 491 - -
Lsi09g01138 500 PANTHER ACID PHOSPHATASE RELATED 2 491 IPR039331 GO:0003993
Lsi09g01138 500 Gene3D - 158 291 IPR029052 -
Lsi09g01138 500 Gene3D - 292 404 IPR029052 -
Lsi09g01138 500 CDD MPP_PAPs 160 478 IPR041792 -
Lsi09g01138 500 SUPERFAMILY Purple acid phosphatase, N-terminal domain 17 153 IPR008963 GO:0003993|GO:0046872
Lsi09g01138 500 Gene3D - 413 487 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01138 K22390 ACP7; acid phosphatase type 7 - csv:101214711 1001.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01138 Lsi-Chr9:18274317 Lsi11g01126 Lsi-Chr11:19691751 2.45E-69 dispersed
Lsi09g01137 Lsi-Chr9:18260425 Lsi09g01138 Lsi-Chr9:18274317 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g907 . . Bda03g01128 . . . Bma04g01056 . . Cmo17g00102 . . . . . . . . . . . . . . Cla06g00762 Cam06g0811 Cec06g0823 Cco06g0829 Clacu06g0813 Cmu06g0787 Cre06g1565 . . . . . . Chy05g00561 . . . . . . . . . Sed09g0186 . . . Cma17g00099 . Car17g00088 Cpe12g00088 . Bhi12g01497 Tan06g2299 Cmetu05g0011 . Hepe03g0361 . . . . . . . . . Lsi09g01138 . . Cme05g00719
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004148 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 2 2 7 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01138 Lsi_Chr09 FPKM 60.836895 67.219238 70.003899 68.740051 11.772264 11.719869 9.737226 24.379356 22.608974 23.297073