Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01139 ATGAAAGTAGGATGTCATTGTGTGTTTCCTCACAAGCCATTCCGTCTCAAACCCTCTGTTTCCTTTTTCCTTTCCCAAATGGCCACACTTGTTCTCTCCCACTCCTTCCTCCTCTTCTTTTTCCTCATCGGAACCTCCGCCGTCGACGGCGCGTACTGGTGCGTGGCTCGCAGCGACGCCACCTACGAATCCCTCCAAGCCGCCCTTGACTACGCCTGCGCCACCGGGGCCGACTGTACTCCGATTCTGTTGAATGGACTCTGTTTCCTCCCCAATACCATCCAAGCCCACGCCTCCTACGCCTTCAACAGCTTCTTCCAGCGCAAGGCTATGGCTCCCGGCTCCTGTGACTTCGCCGGCTCCGCCACCATCGCCCAGAGTGACCCAAGTTATGGATCTTGTGTTTATCCATCTTCTATCAGGAATATTTGGCGGAGATTTCTTCATGTTCAAACACCGTTGGATCAATGTGGCCGAGGCCCAGGTAGTGGTGAGATCCAACGTGCTGCAGGAGGAGCAATCACACCGAGCCCTCCGGCAAACGCAAGCCCGACGATAACAGTGCCAGCTACAACCACACCGAGCTTCAACAATGGCGGTACCGGTGACACGAATGGACTAAATCCGGTATACAATCCAACATCAACCTCGACTCCAACCAACTCGAAAGCCTCCTCGAGTTTTACGATCCCGAAACTCTTAGTCATAATCTTGTTTTCAATTGCTATCTCACTGCCTTCACAAACAATATGGGGTGGGAATGAGCAGAGGGTTTGTTCAGTTTTGTTAGAAATGGTGAGGCTTCCAAAGAATTTTCCTTCAGCTGGACCCGATGTGAAATTGAATGCACAGAAGCCGCCCATGTATTCATCCGGTGTCAAGGCTGGGTCTGGACAGTTTCCAGGTTCATCAGCATGTTCAATTGCCATTTTCTCTCGGTTACCTCCATCGCCTACTGTTATATGGACAGGACCACAACGATCCAAAGTG 990 51.52 MKVGCHCVFPHKPFRLKPSVSFFLSQMATLVLSHSFLLFFFLIGTSAVDGAYWCVARSDATYESLQAALDYACATGADCTPILLNGLCFLPNTIQAHASYAFNSFFQRKAMAPGSCDFAGSATIAQSDPSYGSCVYPSSIRNIWRRFLHVQTPLDQCGRGPGSGEIQRAAGGAITPSPPANASPTITVPATTTPSFNNGGTGDTNGLNPVYNPTSTSTPTNSKASSSFTIPKLLVIILFSIAISLPSQTIWGGNEQRVCSVLLEMVRLPKNFPSAGPDVKLNAQKPPMYSSGVKAGSGQFPGSSACSIAIFSRLPPSPTVIWTGPQRSKV 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18277785 18284498 - Lsi09G011390.1 Lsi09g01139 670752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01139 330 Gene3D - 46 144 - -
Lsi09g01139 330 SMART X8_cls 52 136 IPR012946 -
Lsi09g01139 330 PANTHER BETA-1,3 GLUCANASE 36 235 IPR044788 -
Lsi09g01139 330 Pfam X8 domain 53 123 IPR012946 -
Lsi09g01139 330 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN 36 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01139 - - - csv:101214469 318.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00116 Lsi-Chr2:944509 Lsi09g01139 Lsi-Chr9:18277785 3.22E-35 dispersed
Lsi04g00365 Lsi-Chr4:3646987 Lsi09g01139 Lsi-Chr9:18277785 5.23E-28 dispersed
Lsi08g00894 Lsi-Chr8:17309129 Lsi09g01139 Lsi-Chr9:18277785 1.01E-29 dispersed
Lsi09g01139 Lsi-Chr9:18277785 Lsi05g00572 Lsi-Chr5:7117268 7.38E-27 dispersed
Lsi11g01589 Lsi-Chr11:24284822 Lsi09g01139 Lsi-Chr9:18277785 7.70E-21 dispersed
Lsi09g01139 Lsi-Chr9:18277785 Lsi06g01420 Lsi-Chr6:24743658 1.22E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g906 . Blo12g00115 Bda03g01126 . . . Bma04g01055 . Cmo08g00991 . . . . . . . . . . . . . . . Cla06g00760 . Cec06g0822 . Clacu06g0812 Cmu06g0786 . . . . . . . Chy05g00560 . . . . . . . . . Sed04g2068 . . Cma08g01021 . Car08g00898 . . Cpe17g00255 Bhi12g01498 Tan06g2300 Cmetu05g0712 Lac12g2044 Hepe03g0359 . Lcy13g0466 . . . . . . . Lsi09g01139 . . Cme05g00718
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009076 1 1 1 1 0 1 1 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01139 Lsi_Chr09 FPKM 48.562038 54.219383 59.330822 59.743282 61.714783 59.964722 61.055367 84.309372 80.253754 81.075249