Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01142 ATGGAGGATCAATTCCCACTTATTGAAGAACAAAAAACCATCATTCAAAAGGATTTTTCATCTTCTTCTTTACAAGAATTCGTCTCTGGTTCTTACTTTTATGGCGATCCAACTCTCTGGGGCTCTATAGTTCGATCTTCAAGCTCTGAAAATGGTGGTTCCAATGTCAATATTGAACAATCAAAATCCCCATCTTCTTCTTCCTCTTCTTCTTCTCCTAATTCCCCTTCTCCTTCTTCTTCTTCTTCGTCTTTTAGATTGTTTTCAAGTGAAAAAACTGAGATTTCTGGTGGAAATTTGATCGACAACATTCATGGAGTTGAATGTAATCTTCACCCAAATGGAGAAAGGTTCGTTCCTTTGAATTTCTTGGAGACTTTTCCCAAACAAGAATCTGAGTCTTTTTCTCCTTCTCCTCCTCCTCCTCTGTTTCAGTCTCGAGCAGATTCAACAAATCTGACTCTGTTTCTTCAAGAACCCTCCATTGTTGATCCATCCCCTCGAAACCCATTTCAAATTCATGCTCAAACAGAGCTCCAATGGCTGAAAAATAGCCAAAATCAGAACCAAACCGCCGCCATTGTTGCGGCTGCGTCGAGAAATTACAGTGATTTCTGGCTGGGGGCGACGAAGACGCAGCCGATGAAACAGATTGGAAGAAAACAGGGGAATCACAAAACAGAGTCGTCGGCGACGGCAGTTGGAAAGTTGTTCAGAGGTGTCCGGCAGCGGCACTGGGGGAAATGGGTGGCGGAGATTCGGCTGCCGAGGAATCGGACGAGAGTATGGCTTGGGACATTCGACACAGCCGTCGAAGCCGCGGTCGCCTACGACACCGCCGCCTATATGCTGAGGGGGGAATTTGCACATTTGAATTTTCCCGATCAGAAGCACCGCCTGAAATCCAACTCTCTCAACCGGACCACAGCGGCGCTGCTGGAGGCCAAGTTGCAGGCGATCACACAGGGGAATTCCGGTAAGAAAAAAACCACTGCCGCCACCGCTGCCACCATATCTACCATTGATTCTTCTTCTATTTCAGAGAAGGGATTGTTGGAGGGAGATTCAAAAATGTTGAATTTGAGCAAGAATCCGGTGAAGTTTTCACCGGAAAACATGCCGGGCAGCGGCGGAGGATCTGAAACAGGGGAATTGAAGAGAAATCAAGATGGAAATTTGGAAATTGAACATGTTCAACTAAGCAGAATGCCATCTTTGGATATGGACATGATTTGGGATGCTCTGTTAGTTTCTGATTCATAA 1263 45.53 MEDQFPLIEEQKTIIQKDFSSSSLQEFVSGSYFYGDPTLWGSIVRSSSSENGGSNVNIEQSKSPSSSSSSSSPNSPSPSSSSSSFRLFSSEKTEISGGNLIDNIHGVECNLHPNGERFVPLNFLETFPKQESESFSPSPPPPLFQSRADSTNLTLFLQEPSIVDPSPRNPFQIHAQTELQWLKNSQNQNQTAAIVAAASRNYSDFWLGATKTQPMKQIGRKQGNHKTESSATAVGKLFRGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAVEAAVAYDTAAYMLRGEFAHLNFPDQKHRLKSNSLNRTTAALLEAKLQAITQGNSGKKKTTAATAATISTIDSSSISEKGLLEGDSKMLNLSKNPVKFSPENMPGSGGGSETGELKRNQDGNLEIEHVQLSRMPSLDMDMIWDALLVSDS 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18328018 18329280 + Lsi09G011420.1 Lsi09g01142 670755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01142 420 Gene3D AP2/ERF domain 237 295 IPR036955 GO:0003700|GO:0006355
Lsi09g01142 420 ProSiteProfiles AP2/ERF domain profile. 237 294 IPR001471 GO:0003700|GO:0006355
Lsi09g01142 420 SUPERFAMILY DNA-binding domain 237 295 IPR016177 GO:0003677
Lsi09g01142 420 CDD AP2 236 296 IPR001471 GO:0003700|GO:0006355
Lsi09g01142 420 MobiDBLite consensus disorder prediction 44 88 - -
Lsi09g01142 420 PRINTS Ethylene responsive element binding protein signature 260 276 IPR001471 GO:0003700|GO:0006355
Lsi09g01142 420 PRINTS Ethylene responsive element binding protein signature 238 249 IPR001471 GO:0003700|GO:0006355
Lsi09g01142 420 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 13 419 - -
Lsi09g01142 420 MobiDBLite consensus disorder prediction 365 386 - -
Lsi09g01142 420 Pfam AP2 domain 238 286 IPR001471 GO:0003700|GO:0006355
Lsi09g01142 420 SMART rav1_2 237 300 IPR001471 GO:0003700|GO:0006355
Lsi09g01142 420 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 13 419 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01142 - - - csv:101206365 589.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00953 Lsi-Chr8:18020199 Lsi09g01142 Lsi-Chr9:18328018 6.69E-35 dispersed
Lsi09g00178 Lsi-Chr9:1883453 Lsi09g01142 Lsi-Chr9:18328018 6.91E-29 dispersed
Lsi09g01142 Lsi-Chr9:18328018 Lsi11g01541 Lsi-Chr11:23747887 4.15E-29 dispersed
Lsi09g01142 Lsi-Chr9:18328018 Lsi01g00754 Lsi-Chr1:5900067 6.44E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g903 . . Bda03g01124 Bda08g00035 . . . Bma05g01291 Cmo08g00995 . . . . . . . . . . . . . . . Cla06g00758 Cam06g0808 Cec06g0821 Cco06g0826 Clacu06g0810 Cmu06g0784 Cre06g1562 . . Cone7ag0394 . . . Chy05g00558 . . . . . Bpe05g01141 . . . Sed04g2065 . . Cma08g01023 . Car08g00900 . . . Bhi12g01500 Tan06g2302 Cmetu05g0661 Lac12g2046 Hepe03g0358 . Lcy13g0462 . . . . . . . Lsi09g01142 . . Cme05g00716
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008409 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25925 PF00847 AP2 1.50E-12 CL0081 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01142 Lsi_Chr09 FPKM 18.225883 21.953352 12.598161 11.200572 26.497166 24.208141 29.845436 5.845132 6.956691 6.989614