Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01146 ATGGCTGGCATTCTCCAAGCCAAAACATCAGTACCACCATATTCTGTAGCTTCGATCACCCAACAAATGCACCATCAAATTTCCCCACAAAATGTCATAACTCTTGACAAAAAAAATCCAGCAACCCATCAGGTCCCGGGGGCTTTGGGGCATATGCATCCAGTTACAGTTCATTGGGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGTAATTGAAGTGTCTTCCAACTGTGTTCCATACCCACCACCGCAAACAACATATGATGATATCGTAGCCAATCCGAAGATCTTTATGACATCCTTGGAAAAGCTCCACTCTATCATGGGAACCAAGTTCATGATACCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGAGGGTTGGTGAAGTGCAAACCAGGGCCTTGCCAAAAGCTGTCACAGCAGCGATTGCTGTTTCCTTGCTGCCCATCAAGGATTTAGTCTACATCTACAATGCCGGAAGAATATGTTATAAGAGAGAGAAGATGGAAAGAAATTCCTCTCCTTGCCCAAGTGCGGCGACAATTCCTACGCAAGCGATGACCTCTATGTTGCCGCCATCAGATAATCAGGCAGCGTCCCAGCAACCACGGAGTACTGCTACTGAACTTCCAGCAGTTGCTCCGAGTTCGACATCACCAGGAGGAGGGTTTCCAGTGATCGGAGTCATTGATGGAAAATTTGATAGCGGATATCTTGTTACTGTTACTGTAGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTGAGCAACCTTCTCAGCAACAAGTATTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGCGCTACCTCCACCACACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATAAAGCGAAGGGATCCCGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCCGAACCAGACCTGAATATGGTCTATGCTGACAAAAACGAAGAAACCGAGGGCGGCGAGTCTCCTCAAACACCAGAGAATGATACAAGCTATGTCGAAGGCGACTCTGGAGAGTATAAAACCGAAGAGAAGGAGGAGGAAGAAGAGGACGAAGAGGAGGAGGACTCAGAAGAAGATGCATCTCCACAAGGAATTAGTAATGTGGATGTTAACGTTTTGGTTGAGGAGGAACAATGCGAGACGAGAACAGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTCGGTGAGGATAAAGAAGTTTACGCTGGGGATTCAGTAATGGTGGAGGTGGAGGCAAAGACAGAACCAGAACCAACAACAGCCATTAGAGAAGATTAA 1644 46.96 MAGILQAKTSVPPYSVASITQQMHHQISPQNVITLDKKNPATHQVPGALGHMHPVTVHWEERTEAGWGSRKELTMASTSFAGGKQLPVIEVSSNCVPYPPPQTTYDDIVANPKIFMTSLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKRVGEVQTRALPKAVTAAIAVSLLPIKDLVYIYNAGRICYKREKMERNSSPCPSAATIPTQAMTSMLPPSDNQAASQQPRSTATELPAVAPSSTSPGGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPEQPSQQQVLQPVGAFAKDGATSTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNEETEGGESPQTPENDTSYVEGDSGEYKTEEKEEEEEDEEEEDSEEDASPQGISNVDVNVLVEEEQCETRTAEEDVRKESSTVGEDKEVYAGDSVMVEVEAKTEPEPTTAIRED 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18362625 18367942 - Lsi09G011460.1 Lsi09g01146 670759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01146 547 SMART bright_3 110 197 IPR001606 GO:0003677
Lsi09g01146 547 MobiDBLite consensus disorder prediction 461 481 - -
Lsi09g01146 547 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 335 402 IPR009071 -
Lsi09g01146 547 MobiDBLite consensus disorder prediction 219 253 - -
Lsi09g01146 547 MobiDBLite consensus disorder prediction 315 329 - -
Lsi09g01146 547 Gene3D - 103 171 IPR036431 GO:0003677
Lsi09g01146 547 CDD HMGB-UBF_HMG-box 335 399 - -
Lsi09g01146 547 MobiDBLite consensus disorder prediction 496 519 - -
Lsi09g01146 547 SUPERFAMILY HMG-box 328 407 IPR036910 -
Lsi09g01146 547 Pfam ARID/BRIGHT DNA binding domain 114 157 IPR001606 GO:0003677
Lsi09g01146 547 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 65 474 - -
Lsi09g01146 547 MobiDBLite consensus disorder prediction 219 247 - -
Lsi09g01146 547 MobiDBLite consensus disorder prediction 435 547 - -
Lsi09g01146 547 Coils Coil 460 480 - -
Lsi09g01146 547 SUPERFAMILY ARID-like 106 157 IPR036431 GO:0003677
Lsi09g01146 547 Coils Coil 384 404 - -
Lsi09g01146 547 MobiDBLite consensus disorder prediction 305 341 - -
Lsi09g01146 547 SMART ARID_2 106 202 - -
Lsi09g01146 547 Pfam HMG (high mobility group) box 335 402 IPR009071 -
Lsi09g01146 547 Gene3D High mobility group box domain 319 414 IPR036910 -
Lsi09g01146 547 SMART hmgende2 334 403 IPR009071 -
Lsi09g01146 547 ProSiteProfiles ARID domain profile. 109 201 IPR001606 GO:0003677
Lsi09g01146 547 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 65 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01146 - - - bhj:120068345 772.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01461 Lsi-Chr3:25491155 Lsi09g01146 Lsi-Chr9:18362625 6.65E-10 dispersed
Lsi04g01784 Lsi-Chr4:25054509 Lsi09g01146 Lsi-Chr9:18362625 4.05E-68 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25926 PF00505 HMG_box 8.10E-14 CL0114 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01146 Lsi_Chr09 FPKM 6.567915 7.876479 5.393264 6.302 1.857791 1.675719 2.496013 4.557754 4.924186 5.45905