Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01148 ATGCAGCTGAACCGCCTCTGTTTTCTTCTACCGGCGGACTTCGATGAAGTCCAGCCACTTGATCGTGAAGATCACCTTCAAAAACCCAACGACAACAAACAACAAAACAAACATCACAATCGAGATTGTTGGTCTCAATTTCAAGCCTTGCTTAGAGATTCCCTCTTCAAATTCCACAACCTGAAATGGGTTAATTCTTGTTGCTACGGCGGTGGACCCAGAAAGCCGCCGCCCTCTGATTTTCACGACACCGACGGGGTACAGCTTTCGGAGAAAGTCGGCGGGGATAACCCCAGAATCTTCAGCTTTGCAGAGCTCTATATTGGGACGAAAGGATTTAGTGAAGAGGAAATTCTCGGAAGTGGTGGATTTGGGAAGGTTTACAGAGCATATTTGCCTAGTGATGGAACTGTGGTGGCTGTGAAATGTTTGGCTGAAAAAGGGGAGAAGTTTGAGAAGACGTTTGTGGCGGAGTTGGTGGCGGTGGCTCATCTCCGGCATCGGAATCTTGTCCGGCTCCGTGGTTGGTGTGTTCATGAAGACCAATTGTTTCTTGTTTATGATTATATGCCCAACCGAAGCTTAGACAGAGCACTTTTCCGACGGACAGAGAACGGCGGGACGGATCTGAGTTGGAAACAGAGAATGAAGATTGTGAGTGGCCTGGCTGCTGCTCTGTTCTATATTCATGAGCAATTAGAGACTCAAATCATTCATAGAGATGTTAAAACCAGCAACGTGATGCTTGATTCCAATTACAATGCCAGGCTTGGTGATTTTGGGTTGGCAAGGTGGTTGGAGCATGAACTTGAGTACCAAAACAGGGTACCGTCGATGGGCCACCACCAGTTCCGGCTGGTGGAAACCACCAAAATTGGCGGCACAATTGGGTATCTCCCACCGGAGAGTTTTCAGAGAAGAAGCGTTGCCACTGCAAAATCTGATGTTTTCAGCTTTGGTATTGTGGTTCTTGAGGTGGTCTCTGGTCGGCGGGCGGTGGACCTTACATGTCCTGATGATCAGATTGTGTTGCTTGATTGGATTCGAAAGCTCTCTGATGACGGTACGCCGCTGCTCTCTGGTGATAACCGGCTGCCAGATGGGTCTTATAATCTGAATGAAATGGAGCGTCTGATCCATTTGGGTCTCCTTTGTACACTCCAAAGCCCACAGTATAGACCAAGTATGAAATGGGTTGTGGAAGCACTTTCAGGTGGTATGATGGGGAATTTGCCGGCTCTTCCATCGTTTCAGTCTCATCCTCAATACATTTCTCTATCTTCCCCTACCAATGACAGCACTACCAGAAGCACTAGCAGTAGCAGAACCACAGCAACAAGATCAGACACAACAACAATCACAGTTAGTTCCTCAGATTTCGTTTCAGCCAATGGAGAAACCATATATATGACTGCTGAGAATGGGAACAATTACACCAACTCTTCTGATAGGTTTCTTGACAGATCAAAAACTATTCAAATGATTGAAACCCCAAGAGTAATATCATTCAAGGATATCATTTCAGCCACCAATAACTTCTCCGATTCCCAGCGGGTGGCGGAGCTCGACTTTGGAACTGCCTACCATGGCTTCCTTGACAGCAGCCACCATGTTCTAGTGAAGCGGCTTGGAATGAAGACTTGCCCTGCTTTGCGGGAAAGATTCTCAAATGAACTCCAAAACTTGGGCAGGCTTCGCCATAGAAACTTGATACAGCTTCGTGGATGGTGCACAGAGCAAGGGGAGATGCTTGTGGTTTATGATTATTCAGCAGACCGTCTCTTGAGCCACCTGCTTTTCCACCATGACAATAGAGCCTTGCAATGGTGTCATAGATACAACATTATCAAATCTCTGGCTTCTGCAGTTCTTTATCTTCATGAGGAATGGGATGAACAAGTCATCCACAGGAACATCACCTCATCGGCTGTCATTCTTGATCTTGATCTTAATCCAAGGCTGAGTTCTTTCGCTCTTGCAGAATTCCTAACAAGAAATGAGCACGGCAATCACCATGTAACCATAGATAAAAACAAATCAGTTCGTGGGATTTTCGGGTACATGTCACCGGAGTATTTAGACTCCGGGGACGCAGTGGCGACAGCTGATATATACAGCTTTGGTGTGGTGGTGCTAGAGGTGATTACTGGACAAATGGCGGTCGATTTTCGACGGCCAGAGGTATTGCTGGTGAGGAAAGTTCATGAATTCCACGCCCGGAAAAGACCTCTGGAAGAACTTGTTGATATAAGGCTGAATGGAGAATACAATCACAAAGAACTGATGAGACTGTTGAGATTAGGAATCGCATGTACTCATTCAAACCCAGATCTAAGACCGAAAATGAGGCAGATAGTTAAAATATTAGATGGAAATGACCAATGCTTTACTAAAGAAGAAAAAATGGAGAGCCTAGAAGGTTGGAAACAGAGAAATGCAACTTCTTTGTCACTGGTTAAGAGGATCCAAGCTCTGGGAATTCAGTGA 2487 45.84 MQLNRLCFLLPADFDEVQPLDREDHLQKPNDNKQQNKHHNRDCWSQFQALLRDSLFKFHNLKWVNSCCYGGGPRKPPPSDFHDTDGVQLSEKVGGDNPRIFSFAELYIGTKGFSEEEILGSGGFGKVYRAYLPSDGTVVAVKCLAEKGEKFEKTFVAELVAVAHLRHRNLVRLRGWCVHEDQLFLVYDYMPNRSLDRALFRRTENGGTDLSWKQRMKIVSGLAAALFYIHEQLETQIIHRDVKTSNVMLDSNYNARLGDFGLARWLEHELEYQNRVPSMGHHQFRLVETTKIGGTIGYLPPESFQRRSVATAKSDVFSFGIVVLEVVSGRRAVDLTCPDDQIVLLDWIRKLSDDGTPLLSGDNRLPDGSYNLNEMERLIHLGLLCTLQSPQYRPSMKWVVEALSGGMMGNLPALPSFQSHPQYISLSSPTNDSTTRSTSSSRTTATRSDTTTITVSSSDFVSANGETIYMTAENGNNYTNSSDRFLDRSKTIQMIETPRVISFKDIISATNNFSDSQRVAELDFGTAYHGFLDSSHHVLVKRLGMKTCPALRERFSNELQNLGRLRHRNLIQLRGWCTEQGEMLVVYDYSADRLLSHLLFHHDNRALQWCHRYNIIKSLASAVLYLHEEWDEQVIHRNITSSAVILDLDLNPRLSSFALAEFLTRNEHGNHHVTIDKNKSVRGIFGYMSPEYLDSGDAVATADIYSFGVVVLEVITGQMAVDFRRPEVLLVRKVHEFHARKRPLEELVDIRLNGEYNHKELMRLLRLGIACTHSNPDLRPKMRQIVKILDGNDQCFTKEEKMESLEGWKQRNATSLSLVKRIQALGIQ 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18426235 18428721 + Lsi09G011480.1 Lsi09g01148 670761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01148 828 CDD STKc_IRAK 524 791 - -
Lsi09g01148 828 Gene3D Transferase(Phosphotransferase) domain 1 190 408 - -
Lsi09g01148 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Lsi09g01148 828 Gene3D Transferase(Phosphotransferase) domain 1 592 813 - -
Lsi09g01148 828 ProSiteProfiles Protein kinase domain profile. 113 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01148 828 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 1 827 - -
Lsi09g01148 828 PANTHER - 1 827 - -
Lsi09g01148 828 SUPERFAMILY Protein kinase-like (PK-like) 488 789 IPR011009 -
Lsi09g01148 828 Pfam Protein kinase domain 114 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01148 828 Gene3D Phosphorylase Kinase; domain 1 476 589 - -
Lsi09g01148 828 Gene3D Phosphorylase Kinase; domain 1 85 189 - -
Lsi09g01148 828 MobiDBLite consensus disorder prediction 422 451 - -
Lsi09g01148 828 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Lsi09g01148 828 ProSiteProfiles Protein kinase domain profile. 513 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01148 828 Pfam Protein tyrosine and serine/threonine kinase 520 789 IPR001245 GO:0004672|GO:0006468
Lsi09g01148 828 SUPERFAMILY Protein kinase-like (PK-like) 97 415 IPR011009 -
Lsi09g01148 828 SMART serkin_6 113 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01148 - - - csv:101205657 1540.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01148 Lsi-Chr9:18426235 Lsi03g02241 Lsi-Chr3:33415119 7.95E-64 dispersed
Lsi09g01148 Lsi-Chr9:18426235 Lsi03g02126 Lsi-Chr3:32450062 1.54E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g896 . . . Bda08g00033 . . . . Cmo08g00998 Cmo17g00106 . . . . . . . . . . . . . . Cla06g00751 . . . . . . . . . . . . Chy05g00555 . . . . . . . . . . . . Cma08g01026 Cma17g00103 Car08g00903 Car17g00092 Cpe12g00092 Cpe17g00250 Bhi12g01503 . . . . . Lcy13g0459 . . . . . . . Lsi09g01148 . . Cme05g00712
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010661 1 1 0 0 0 1 2 0 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 2 0 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83904 PF07714 PK_Tyr_Ser-Thr 1.50E-27 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01148 Lsi_Chr09 FPKM 34.289726 35.694241 32.548042 37.545071 17.140326 16.755537 18.516146 47.735733 45.351818 44.937443