Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01152 ATGCCAAGTAATAGAAAATCGAACCATTTTGATGTTCTCACTAGTTGTACTATGGTTGGTCGTTCAGCCCAGAATGCGATCGACAAGCGTTCAGTTGTTTTGGCAGTTTACAATGTAACCGAGTTCTTGGAAGACCATCCTGGTGGCGACGAGGTGTTGTTGTCCGGCACTGGTAAGGATGCAACTGATGATTTTGAAGATGTGGGTCATAGTGAAAGTGCAAGAGAAATGATGAGCAAATACTACGTTGGAGAGATCGACATCTCGACGATCCCAGAACAGACGACATACACAACTCCAAAGCAGCCTCATTACAATCAGGATAAGACGACCGAGTTCATAATCAAGCTCCTCCAGTTCTTGGTTCCTCTCGCAATCTTGGGTTTGGCAGTCGGTATCCGCTTTTACACCAAATCAACCTGA 423 45.15 MPSNRKSNHFDVLTSCTMVGRSAQNAIDKRSVVLAVYNVTEFLEDHPGGDEVLLSGTGKDATDDFEDVGHSESAREMMSKYYVGEIDISTIPEQTTYTTPKQPHYNQDKTTEFIIKLLQFLVPLAILGLAVGIRFYTKST 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18461940 18465693 + Lsi09G011520.1 Lsi09g01152 670765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01152 140 PRINTS Cytochrome B5 signature 46 60 IPR001199 -
Lsi09g01152 140 PRINTS Cytochrome B5 signature 61 68 IPR001199 -
Lsi09g01152 140 PRINTS Cytochrome B5 signature 74 86 IPR001199 -
Lsi09g01152 140 PRINTS Cytochrome B5 signature 36 46 IPR001199 -
Lsi09g01152 140 PANTHER BNAC04G43300D PROTEIN 34 138 - -
Lsi09g01152 140 Pfam Cytochrome b5-like Heme/Steroid binding domain 35 86 IPR001199 -
Lsi09g01152 140 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 36 87 IPR001199 -
Lsi09g01152 140 SMART Cyt_b5_2 27 87 IPR001199 -
Lsi09g01152 140 PANTHER CYTOCHROME B5 34 138 - -
Lsi09g01152 140 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 42 49 IPR018506 GO:0020037
Lsi09g01152 140 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 36 97 IPR036400 -
Lsi09g01152 140 Gene3D - 11 89 IPR036400 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00003 Lsi-Chr9:27466 Lsi09g01152 Lsi-Chr9:18461940 1.07E-50 dispersed
Lsi09g01152 Lsi-Chr9:18461940 Lsi09g01656 Lsi-Chr9:24931374 3.66E-20 dispersed
Lsi05g01833 Lsi-Chr5:25617233 Lsi09g01152 Lsi-Chr9:18461940 3.59E-63 wgd
Lsi05g01118 Lsi-Chr5:18960560 Lsi09g01152 Lsi-Chr9:18461940 1.04E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01152 K23490 - csv:101213506 201.83