Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01152 ATGCCAAGTAATAGAAAATCGAACCATTTTGATGTTCTCACTAGTTGTACTATGGTTGGTCGTTCAGCCCAGAATGCGATCGACAAGCGTTCAGTTGTTTTGGCAGTTTACAATGTAACCGAGTTCTTGGAAGACCATCCTGGTGGCGACGAGGTGTTGTTGTCCGGCACTGGTAAGGATGCAACTGATGATTTTGAAGATGTGGGTCATAGTGAAAGTGCAAGAGAAATGATGAGCAAATACTACGTTGGAGAGATCGACATCTCGACGATCCCAGAACAGACGACATACACAACTCCAAAGCAGCCTCATTACAATCAGGATAAGACGACCGAGTTCATAATCAAGCTCCTCCAGTTCTTGGTTCCTCTCGCAATCTTGGGTTTGGCAGTCGGTATCCGCTTTTACACCAAATCAACCTGA 423 45.15 MPSNRKSNHFDVLTSCTMVGRSAQNAIDKRSVVLAVYNVTEFLEDHPGGDEVLLSGTGKDATDDFEDVGHSESAREMMSKYYVGEIDISTIPEQTTYTTPKQPHYNQDKTTEFIIKLLQFLVPLAILGLAVGIRFYTKST 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18461940 18465693 + Lsi09G011520.1 Lsi09g01152 670765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01152 140 PRINTS Cytochrome B5 signature 46 60 IPR001199 -
Lsi09g01152 140 PRINTS Cytochrome B5 signature 61 68 IPR001199 -
Lsi09g01152 140 PRINTS Cytochrome B5 signature 74 86 IPR001199 -
Lsi09g01152 140 PRINTS Cytochrome B5 signature 36 46 IPR001199 -
Lsi09g01152 140 PANTHER BNAC04G43300D PROTEIN 34 138 - -
Lsi09g01152 140 Pfam Cytochrome b5-like Heme/Steroid binding domain 35 86 IPR001199 -
Lsi09g01152 140 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 36 87 IPR001199 -
Lsi09g01152 140 SMART Cyt_b5_2 27 87 IPR001199 -
Lsi09g01152 140 PANTHER CYTOCHROME B5 34 138 - -
Lsi09g01152 140 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 42 49 IPR018506 GO:0020037
Lsi09g01152 140 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 36 97 IPR036400 -
Lsi09g01152 140 Gene3D - 11 89 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01152 K23490 CYB5; cytochrome b5 - csv:101213506 201.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00003 Lsi-Chr9:27466 Lsi09g01152 Lsi-Chr9:18461940 1.07E-50 dispersed
Lsi09g01152 Lsi-Chr9:18461940 Lsi09g01656 Lsi-Chr9:24931374 3.66E-20 dispersed
Lsi05g01833 Lsi-Chr5:25617233 Lsi09g01152 Lsi-Chr9:18461940 3.59E-63 wgd
Lsi05g01118 Lsi-Chr5:18960560 Lsi09g01152 Lsi-Chr9:18461940 1.04E-53 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G53560 78.4 7.0e-59 223.4
Lsi05g01833 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.1e-51 197.6
Lsi05g01118 . 4 131 NADPH P450 reductases AT5G53560 63.3 4.4e-45 177.6
Lsi09g01152 . 36 139 NADPH P450 reductases AT5G53560 70.2 4.7e-39 157.5
Lsi05g01833 . 1 132 NADPH P450 reductases AT5G48810 65.7 2.6e-48 188.3
Lsi05g01118 . 2 132 NADPH P450 reductases AT5G48810 61.7 4.6e-45 177.6
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G48810 59.6 7.9e-45 176.8
Lsi05g01833 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.0e-51 196.8
Lsi09g01152 . 31 139 NADPH P450 reductases AT2G32720 83.5 1.2e-47 186.0
Lsi05g01118 . 21 132 NADPH P450 reductases AT2G32720 72.3 2.7e-42 168.3
Lsi09g00003 . 22 133 NADPH P450 reductases AT2G32720 66.1 4.3e-40 161.0
Lsi01g01736 CCT 3 257 NADPH P450 reductases AT5G17770 79.6 1.2e-116 416.4
Lsi10g00932 . 10 282 NADPH P450 reductases AT5G17770 71.8 4.5e-116 414.5
Lsi03g01657 CCT 2 110 NADPH P450 reductases AT5G17770 81.7 1.8e-48 189.9
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G53560 78.4 7.0e-59 223.4
Lsi05g01833 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.1e-51 197.6
Lsi05g01118 . 4 131 NADPH P450 reductases AT5G53560 63.3 4.4e-45 177.6
Lsi09g01152 . 36 139 NADPH P450 reductases AT5G53560 70.2 4.7e-39 157.5
Lsi05g01833 . 1 132 NADPH P450 reductases AT5G48810 65.7 2.6e-48 188.3
Lsi05g01118 . 2 132 NADPH P450 reductases AT5G48810 61.7 4.6e-45 177.6
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G48810 59.6 7.9e-45 176.8
Lsi05g01833 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.0e-51 196.8
Lsi09g01152 . 31 139 NADPH P450 reductases AT2G32720 83.5 1.2e-47 186.0
Lsi05g01118 . 21 132 NADPH P450 reductases AT2G32720 72.3 2.7e-42 168.3
Lsi09g00003 . 22 133 NADPH P450 reductases AT2G32720 66.1 4.3e-40 161.0
Lsi01g01736 CCT 3 257 NADPH P450 reductases AT5G17770 79.6 1.2e-116 416.4
Lsi10g00932 . 10 282 NADPH P450 reductases AT5G17770 71.8 4.5e-116 414.5
Lsi03g01657 CCT 2 110 NADPH P450 reductases AT5G17770 81.7 1.8e-48 189.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01152 Lsi_Chr09 FPKM 1.635143 1.656237 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0