Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01160 ATGCAAATCTGTTTACAATCACCACTGCCGCTGTCACTTTGCCGGAGCTCCTCCACCATTGAAACCCCTCCAATTAGGAAGCTCAAATTAATCCCTCCACCAGCGCCACCAAAAACGGTGTCGCTGCCGCTGCGTCGGCTCAACCCATTTCAGAATTTGGCGGCGTCGCTACTGGACGCCGTCGAGTCGTCGCTGATCGTTGATAAATTGCCGAAAACGGTCGACCCGGCGGTTCAAATTTCGGGTAATTTCTCTCCGGTTTCCGAATGCCCCGTCCGCCACGACCTTGAAATCATCGGAAATTTACCTGCATGCTTACGTGGCGTTTATTTACGAAACGGCGCTAATCCCATGCATGCACCCATAGGTGGGCACCACTTGTTTGACGGTGATGGAATGATCCATGCCGTTGCATTTCACTGCGGTAACAAAGCTAGTTACAGCTGCCGGTTCACTCGTACAAGCCGGCTCCAGCAGGAAGCCGCTTTAGGCCGATCGGTTTTTCCCAAGCCGATCGGCGAGCTTCATGGTCACCAAGGACTGGCTCGGCTTGCAATCTTTTTAGCTCGTGCTGGGATCGGGTTAATCGACGGCTCGAAAGGGACAGGTGTCGCCAACGCCGGTCTGGTTTATTTCAACGGTCGATTATTAGCTTTATCCGAAGATGATCTTCCGTATCACGTTAAAATCAAGGACGATGGAGATCTTGAAACGATCGGACGGTTCAACTTCAACGGACAGATTAACTGTCCCATGATTGCTCATCCTAAAGTGGACCCCATTTCGGGCGATCTTCACGGTTTGAGTTACAACATGATTAAAAAACCGTATTTGAAATACTTACGGTTCGACCGGTTCGGGAAAAAATCTCGTGACGTGGACATCACCCTTCGTGAACCGACGATGATTCACGATTTCGCGATAACGGAAAACCACGTCGTGATACCAGATCATCAGGTGGTTTTCAAGTTATCCGAAATGGTTCGGGGTGGATCACCGGTCGTGTTTGACCCGAAGAAAACTTCCCGGTTTGGCATTTTGCCGAAATCCGAAGTTGACGAAAAGGGAATGGTTTGGATTGAGGTACCAAATTGTTTTTGCTTCCATTTGTGGAATGCATGGGAGGAAACCGGTGACAACGACGAGAAAACCATCGTCGTAGTCGGGTCGTGTATGAACCCGCCTGATTCGATTTTCAACGACCGGGATCAGCCGTTAAAAATCGAGCTGACGGAAATCCGGATGGATGTGAGGAACCGGAAAGTGACCAGGCGGGTGTTCGGTTCAGGGTTGAATTTAGAAGCGGGTCAAGTGAACCGGGGATTGGTTGGGCGGAGAACCCGGTTCGTTTATATGGCGATAGCGGAGCCGTGGCCTAAATGTTCCGGCATTGCGAAGGTGGATTTGGAAACCGGGAAGGTGAAGAAGTTTCTATATGGTGACGGTCGTTACGGCGGTGAACCATTTTACGTGTCGGAAAATGGGAATTGCGGCGGTGATCATGAGAATGAGGACGGAGGGTTTATTGTAGGATTCGTGAGGGACGAGAAGCGGGAGAGGTCAGAGGTGGTGGTGGTGAAGGCGGCAGAAATGGAGGAAGTGGCGGCGGTGAGGCTGCCGGCGAGGGTTCCGTACGGATTTCACGGCACATTTGTTAGTGAAGAAGAGTTGAAGGGGCAAGCTCCGAAGTAG 1692 51.12 MQICLQSPLPLSLCRSSSTIETPPIRKLKLIPPPAPPKTVSLPLRRLNPFQNLAASLLDAVESSLIVDKLPKTVDPAVQISGNFSPVSECPVRHDLEIIGNLPACLRGVYLRNGANPMHAPIGGHHLFDGDGMIHAVAFHCGNKASYSCRFTRTSRLQQEAALGRSVFPKPIGELHGHQGLARLAIFLARAGIGLIDGSKGTGVANAGLVYFNGRLLALSEDDLPYHVKIKDDGDLETIGRFNFNGQINCPMIAHPKVDPISGDLHGLSYNMIKKPYLKYLRFDRFGKKSRDVDITLREPTMIHDFAITENHVVIPDHQVVFKLSEMVRGGSPVVFDPKKTSRFGILPKSEVDEKGMVWIEVPNCFCFHLWNAWEETGDNDEKTIVVVGSCMNPPDSIFNDRDQPLKIELTEIRMDVRNRKVTRRVFGSGLNLEAGQVNRGLVGRRTRFVYMAIAEPWPKCSGIAKVDLETGKVKKFLYGDGRYGGEPFYVSENGNCGGDHENEDGGFIVGFVRDEKRERSEVVVVKAAEMEEVAAVRLPARVPYGFHGTFVSEEELKGQAPK 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18638525 18640216 - Lsi09G011600.1 Lsi09g01160 670773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01160 563 PANTHER 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED6, CHLOROPLASTIC 43 560 - -
Lsi09g01160 563 Pfam Retinal pigment epithelial membrane protein 87 553 IPR004294 GO:0016702
Lsi09g01160 563 PANTHER BETA-CAROTENE DIOXYGENASE 43 560 IPR004294 GO:0016702
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01160 K09840 NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] - csv:101221572 1013.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02570 Lsi-Chr2:32159765 Lsi09g01160 Lsi-Chr9:18638525 7.50E-67 dispersed
Lsi07g00845 Lsi-Chr7:9468950 Lsi09g01160 Lsi-Chr9:18638525 0 dispersed
Lsi08g01085 Lsi-Chr8:19415522 Lsi09g01160 Lsi-Chr9:18638525 1.38E-13 dispersed
Lsi09g01160 Lsi-Chr9:18638525 Lsi01g00140 Lsi-Chr1:1451654 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g851 . . . . . . . . . Cmo17g00118 . . . . . . . . . . . . . . Cla06g00740 Cam06g0791 Cec06g0797 . Clacu06g0790 Cmu06g0764 Cre06g1544 . . . . . . . . . . . . . . . . . . . . Cma17g00115 . Car17g00102 Cpe12g00101 . . . . . . . . . . . . . . . Lsi09g01160 . . Cme05g00659
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013527 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01160 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0