Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi09g01161 | ATGGCGGCACTTAGTAAATGGCCTTCTCTGTCTCTGTTTGCCCTCGCATTGGTGTTCTTCGTAACAATCGCTCTGGTTCGCAAAGAAGAGACCTCTGAAATTAGGACTGTGTTAGCGGCGGAGTTTCAGAGCTCTAGCAACTCATCAATGGCGACTAGGTCAGTGTTCGTTTCATTAACTCGAGTAAATGAAAAGAGGCGAAAATCTGTACCGAACGAAACAATCTCGGCCGTGCATTTAACCCATCTTGCTAATCACAACCGTTGGATTCTCCTCGGATCCGTGGGGTGTGATGATCCAACTTTACTCCCCTTCGGATTCCTTCGCTGCAGTGAAATAAACACCACAACGCTGCTAGTTTATTTCCGTAATTACCCCGACAAACTCCTCTTAATTTCCCCAGATTGCTCGATAAAATACCGGGTACGGGTGGAGAATGATGATGTGGAGCAAGAACTCAACAATGAACATGCTGTGGATAATCCTGACGAGATTGCTGCTTCTGTTGAGATGAGTATCCGTAATAGCACTGAAAGAAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCCAATTGGCACCGCAACCGTAAGCGTCTTGCGGAATGTGGCATCGGGTTTGGTCGAAATGCTATTGGTGGACGTGACGGTCGTTTCTATGTCGTAACTGATTCAAGTGACAATGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAGAGGGACATGGTGATTCAATTGAAACAGGAACTCATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACACATTGCTAATGGTGCTTGCATCACAATCCAGTTTGTGACTAACATAATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGGAATGCCATGGTGAGAAGCTCTACAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGCCATATATGGATTGACCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCTAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCACAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGTTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCTCCAACCAACCCTTTCGCCAAAGAGGTGACGAAGCGAGTTGAAACAGCAGAGAGCGAATGGAAGGGATGGAATTGGAGATCAGAAGGAGATATGTTGCTGAATGGTGCTTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCTAAATCTGCTTCCATGGTTGGCTCCATCACTTCTTCTGCAGGTTCGCTCCCTTGCCGCCGAGGCCATCCTTGCTAA | 1620 | 46.36 | MAALSKWPSLSLFALALVFFVTIALVRKEETSEIRTVLAAEFQSSSNSSMATRSVFVSLTRVNEKRRKSVPNETISAVHLTHLANHNRWILLGSVGCDDPTLLPFGFLRCSEINTTTLLVYFRNYPDKLLLISPDCSIKYRVRVENDDVEQELNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSTTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC | 539 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 18677108 | 18681142 | + | Lsi09G011610.1 | Lsi09g01161 | 670774 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi09g01161 | 539 | Pfam | Pectate lyase | 277 | 454 | IPR002022 | - | |
| Lsi09g01161 | 539 | PANTHER | PECTATE LYASE 18-RELATED | 142 | 536 | IPR045032 | GO:0030570 | |
| Lsi09g01161 | 539 | SMART | amb_all | 265 | 462 | IPR002022 | - | |
| Lsi09g01161 | 539 | PANTHER | PECTATE LYASE | 142 | 536 | - | - | |
| Lsi09g01161 | 539 | Gene3D | - | 190 | 532 | IPR012334 | - | |
| Lsi09g01161 | 539 | SUPERFAMILY | Pectin lyase-like | 167 | 533 | IPR011050 | - | |
| Lsi09g01161 | 539 | PRINTS | Pollen allergen Amb family signature | 510 | 533 | IPR018082 | - | |
| Lsi09g01161 | 539 | PRINTS | Pollen allergen Amb family signature | 213 | 230 | IPR018082 | - | |
| Lsi09g01161 | 539 | PRINTS | Pollen allergen Amb family signature | 337 | 358 | IPR018082 | - | |
| Lsi09g01161 | 539 | PRINTS | Pollen allergen Amb family signature | 237 | 262 | IPR018082 | - | |
| Lsi09g01161 | 539 | PRINTS | Pollen allergen Amb family signature | 481 | 505 | IPR018082 | - | |
| Lsi09g01161 | 539 | PRINTS | Pollen allergen Amb family signature | 439 | 458 | IPR018082 | - | |
| Lsi09g01161 | 539 | PRINTS | Pollen allergen Amb family signature | 273 | 289 | IPR018082 | - | |
| Lsi09g01161 | 539 | PRINTS | Pollen allergen Amb family signature | 417 | 436 | IPR018082 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi05g01813 | Lsi09g01161 | CCT | |
| Lsi05g01813 | Lsi09g01161 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g00043 | Lsi-Chr2:427990 | Lsi09g01161 | Lsi-Chr9:18677108 | 1.12E-92 | dispersed | |
| Lsi03g01460 | Lsi-Chr3:25486590 | Lsi09g01161 | Lsi-Chr9:18677108 | 2.19E-164 | dispersed | |
| Lsi04g00102 | Lsi-Chr4:1154248 | Lsi09g01161 | Lsi-Chr9:18677108 | 0 | dispersed | |
| Lsi08g00688 | Lsi-Chr8:15184400 | Lsi09g01161 | Lsi-Chr9:18677108 | 3.43E-177 | dispersed | |
| Lsi08g00746 | Lsi-Chr8:15800810 | Lsi09g01161 | Lsi-Chr9:18677108 | 3.89E-170 | dispersed | |
| Lsi02g01614 | Lsi-Chr2:22008013 | Lsi09g01161 | Lsi-Chr9:18677108 | 0 | transposed | |
| Lsi08g01628 | Lsi-Chr8:24200656 | Lsi09g01161 | Lsi-Chr9:18677108 | 0 | transposed | |
| Lsi05g01813 | Lsi-Chr5:25363141 | Lsi09g01161 | Lsi-Chr9:18677108 | 0 | wgd | |
| Lsi05g01093 | Lsi-Chr5:18683540 | Lsi09g01161 | Lsi-Chr9:18677108 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi09g01161 | K01728 | - | csv:101217580 | 807.364 |