Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01170 ATGGCGGCTACAAATTGCTCTCTGACTCTAGCCCAGCTCCTCGGCCCCAACGTCACCAACTCCGGCGCCGCTGCTTCCTTCATTTGCGACCAATTCTCCACCTCAACCAACAACTTCTCCGACACCAAATTCGCCGTCGACACCGTCTACCTCCTCTTCTCCGCCTACCTTGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGTGCCGGCTCCGTCCGCGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCTGCCGCCGGCGGCCTTTTCTACTACCTCTTCGGATTCGCCTTCGCCTTTGGCACCCCTTCCAACCCCTTCATCGGCCGCCATTTCTTTGGCCTCAAGTCAATCCCCTCCACCGCCGCCGATTACAGCTTCTTTCTCTATCAATGGGCTTTCGCTATCGCTGCCGCTGGTATCACCAGCGGCTCAATTGCCGAGCGAACCCAATTTGTTGCCTATTTGATCTACTCCTCTGTTTTGACCGGTTTTGTTTACCCGGTCGTGTCTCATTGGTTCTGGTCTCCAGACGGTTGGGCCAGCCCGTCACGGTCCAACGGAGATCTCTTGTTTGGAACCGGAGTCATAGATTTCGCCGGTTCAGGTGTGGTTCACATGGTCGGTGGAATCGCTGGACTTTGGGGAGCTTTAATAGAAGGACCACGAATCGGCCGGTTCGACAAAACCGGAAGATCCGTCGCTCTACGAGGCCATAGCGCTACGTTAGTCGTTCTCGGTACCTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCCTTCACTAAAATTTTAATTCCATATGGTTCGAATAATTACTACGGGCAATGGAGCGCTGTTGGTCGAACCGCCGTGACGACAACATTGGCCGGTTGCACGGCAGCACTAACGACCCTTTTCGGTAAAAGAATTCTATCCGGCCACTGGAACGTCACCGACGTCTGCAACGGCTTACTCGGCGGCTTCGCCGCCATAACCTCTGGTTGCTCGGTGGTGGAGCCATGGGCCGCTGTGATATGTGGGTTTGTGGCGGCCGTGGTTTTAATCAGCTGCAACAAACTAGCAGAGAAGGTGAAATTCGACGACCCATTGGAGGCTGCACAATTGCACGGCGGTTGCGGGGCGTGGGGGATAATTTTCACGGCGTTGTTCGCAACGAAGAAGTATGTGCAGGAGGTGTACGGCGGAGATATGGAGCGGCCACATGGGTTGTTTATGGGTGGCGGAGGAAAGTTATTGGGTGCACATTTGATACAAATTTTAGTGATTGTTGGTTGGGTTAGCGTCACAATGGGGCCTTTGTTTTTTGGGTTACATAAGCTGAAACTATTAAGAATCTCATCGGAGGATGAGATGGCCGGAATGGATATGACCAGACACGGTGGATTTGCTTACGTGTACCATGATGAAGATGAATCTCCGACCAGTGGAGTCCAAATGAGTAAGATTAAGCCAAGGGAAACAAGTCCAATTGGAAATTAA 1503 52.83 MAATNCSLTLAQLLGPNVTNSGAAASFICDQFSTSTNNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNPFIGRHFFGLKSIPSTAADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASPSRSNGDLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDKTGRSVALRGHSATLVVLGTFMLWFGWYGFNPGSFTKILIPYGSNNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAAVVLISCNKLAEKVKFDDPLEAAQLHGGCGAWGIIFTALFATKKYVQEVYGGDMERPHGLFMGGGGKLLGAHLIQILVIVGWVSVTMGPLFFGLHKLKLLRISSEDEMAGMDMTRHGGFAYVYHDEDESPTSGVQMSKIKPRETSPIGN 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 18944306 18945808 + Lsi09G011700.1 Lsi09g01170 670783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01170 500 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lsi09g01170 500 MobiDBLite consensus disorder prediction 478 500 - -
Lsi09g01170 500 TIGRFAM amt: ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lsi09g01170 500 Gene3D Ammonium transporter AmtB like domains 26 491 IPR029020 -
Lsi09g01170 500 PANTHER AMMONIUM TRANSPORTER 5 495 - -
Lsi09g01170 500 SUPERFAMILY Ammonium transporter 46 453 - -
Lsi09g01170 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lsi09g01170 500 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 5 495 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01783 Lsi-Chr5:25159224 Lsi09g01170 Lsi-Chr9:18944306 0 dispersed
Lsi09g01170 Lsi-Chr9:18944306 Lsi11g00907 Lsi-Chr11:12336294 0 dispersed
Lsi01g00559 Lsi-Chr1:4484792 Lsi09g01170 Lsi-Chr9:18944306 6.77E-16 transposed
Lsi03g02239 Lsi-Chr3:33399862 Lsi09g01170 Lsi-Chr9:18944306 3.48E-22 transposed
Lsi08g01170 Lsi-Chr8:20318908 Lsi09g01170 Lsi-Chr9:18944306 1.27E-25 transposed
Lsi05g01060 Lsi-Chr5:18115979 Lsi09g01170 Lsi-Chr9:18944306 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01170 K03320 - csv:101212168 945.266