Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01178 ATGGCTTCGGCTCAGGTTTTGCCCAATTCGATGGCCTCGACTCGGAAATTAGAGCATTTGGAAGCAGGGAAGCGTCGGTTAGAGGAGTTCAGAAAGAAAAAAGCAGCAGAGCGAGTTAAGAAAGCTGCACCACCAAGCCAAAATCACATTTCAGATGCTGGCACCCAGGAGAAGAAGCCTTCTGAATCTGAACATGCCCAACGGATTACAGATTCTGATGGAGCTACAACAACAAACGGAGCAGGCAGATCTGCTATTGAATCATCTTCTGCTCTGGTCAAAGATGACAGACATGCAGATAACTTTTCTCAGAACATTGATCAAAATGCCTTGAATGAAAAACATGCAAGCTATCCTTTTTCAAGAAATGGTGATGGAGTCTTCAATGCTGATCCAGTGAAGCGACCATCAAATGGTCAAGAAATTAGGACATTCAATGGTTCTAGGCTCTCTGGAACCGCAGCTGTTAATAATAAAAACGAGATATTAGAAATAAATAAAGACTCCGAAGTAATCAATGGACCCCAGGCTAGAATTTCATTTCGGAGTGCATTTGGCATTAACCCTCAAGCAAGTGAAGAGACCGATAGCCTTATTAGTCAATCTGCTCACCATGGGGTGGATGGACTACTCTTTAGGAGAGACAGTCAAGAGAATCCTATACTTGAGAGCTCTGGTTCTTTGCATAAGTTTTCTGCAAATATTTCTCCACAGAATACTGTTGGCAATTTACAAGATTCAGATTCCAGTAGTAACGATATTTTGGCTAGTGGACATTCTTTCCCGTCATCTTATGATGGCTTCTTTAATAGTACAACTAGAAAAGGATATAGTTCCCATGAAGTTGGGGAAAATGTGCACAGAAATTTTGAATTCATCAACAATCAGACGTCTGATCTTGAACAGCGAAAGCCCATTGATGTGACTGATTTTACTAGAATCAAGCCTGTAAATGTGCAGTCATCTGAATCTGCTGGCTTGAATGCTGATATTAGAATCCCCTCCAACTATGAACCACCATACACTGCATCCGAAAATAGTTTTAGGAGACCTCGTCCATCATTTCTTGATTCTCTTACTGTACCTAAGGCTCCTTCAGGGAGTTTTCTTGGACATGCTGAACGTTATAATGAATCTAGAATATCTGATGGGTTTAAAGTTGAAAAAGATGCCCCAGTATCCTTCTCCTTTCAGAACCCTATAAAATCTGATGGGTTTAGAACAGGTGAACGTGATGGCTCAGAGTCATTAATTTTACAGAAGCCATTAATGGATGTGAAAACAGTGGGAGCATCCTCTGATTTTAGTTCTCAAAACACTCCAGTGTCGTATAGCAATTCATTTCCTCCTTCAGTTTTTTCTGTCAAGGGGGTGGACCAGCCAATTATAGGAATTGAGGATAATACTATGGAGAGGAAACATGAACTTTATTCATCCAAGCAAAATGAAGATTTTGCTGCTCTGGAGCAGCATATTGAAGATTTGACACAAGAGAAATTCTCGTTACAAAGAGCTCTGGAGGCTTCAAGGACTTTAGCAGAGTCCTTAGCAGCTGAAAATTCATCTCTGACTGATAGTTATAATAAACAGAGAAGCATTGTCAACCAACTAAAATCGGATATGGAGATGTTACAGGAGGAAATGAAGACGCAGATGGTTGAATTGGAGTCTATCAAACTTGAGTATGCAAATGCACAACTAGAGTGTAATGCAGCCGATGAACGTGCCAAGCTGATAGCTTCTGAAGTAATTGGTCTTGAAGAGAAGGGTGGTAGGTTCCGGCTTTCCTCTGTAGTTTTGACTTTTGATCTTGACGACTATAGAGGAGCTTTAGATAAACCCAACCTTGAACCCTTCCAGCCAGACACCTCCTCTGATGACTCCAATGGAAACTTCAAGGATCATGCCTTAAGACTAAGGTCTAATGAGTTAAAGCTGGAGAGGCAATTGGAGAACTTGGAAGCTGAAATCTTTTCATACAAGAAGAAAATGTCTAGCATGGAGAAAGAACGTCAGGATTTTCAATCAACTATTGATGCTCTTCAGGAAGGGATGGTGGATTGTCGTGAGGATAGTAATCCTAGGATTCTCAAATATATAATACAGAAGAAGCTGTTGCAGTCTAAGTTACGCAAAGCTTCTGCAAATGGAAAGTCTATCGATATTAGCAATCCATCTAATAGAAAAGACATGGCGACATCTACAGAAGATTTAGTAAATACAGATACCTCTCCTAGTACTTTTAACCATGAAGTAAAAGATGGAGAATCTCTTACTGAAGATGATACCTCTGGAGCTCCCATGCTGCTTGAAAATGCCACTACCGAAGTTTCATCCGTCATTATCCCTCCCGATCATATGAGGATGATCCAAAACATCAATGCTCTAATTGCTGAGTTAGCTGTAGAGAAAGAGGAGTTAACACAAGCTTTGGCATCTGAGTTGGCTAGCAGTTCGAGGTTGAAGGAGTTGAACAAAGAGTTGTCTAGGAAACTAGAAGCACAAACTCAAAGATTAGAGCTTTTGACTGCTCAAAGTATGGCTGGTGAGATTGTTCCTGTGAGGCTACCTGATTCTCGCACAGCACATGATGAAGATATTGTACTTGCAGATGAGGGCGATGAGGCATATAAACATTTCTCATTCTTAGGTGGTGGAAAGAGTCTTGGGATGGATTATGAAGCTCTTTCCCGGTGGCCCGTCGCGCCGAAGGACCAGCAAGCTTCTTTGAGATGTGGGGTGGTCTAA 2748 41.3 MASAQVLPNSMASTRKLEHLEAGKRRLEEFRKKKAAERVKKAAPPSQNHISDAGTQEKKPSESEHAQRITDSDGATTTNGAGRSAIESSSALVKDDRHADNFSQNIDQNALNEKHASYPFSRNGDGVFNADPVKRPSNGQEIRTFNGSRLSGTAAVNNKNEILEINKDSEVINGPQARISFRSAFGINPQASEETDSLISQSAHHGVDGLLFRRDSQENPILESSGSLHKFSANISPQNTVGNLQDSDSSSNDILASGHSFPSSYDGFFNSTTRKGYSSHEVGENVHRNFEFINNQTSDLEQRKPIDVTDFTRIKPVNVQSSESAGLNADIRIPSNYEPPYTASENSFRRPRPSFLDSLTVPKAPSGSFLGHAERYNESRISDGFKVEKDAPVSFSFQNPIKSDGFRTGERDGSESLILQKPLMDVKTVGASSDFSSQNTPVSYSNSFPPSVFSVKGVDQPIIGIEDNTMERKHELYSSKQNEDFAALEQHIEDLTQEKFSLQRALEASRTLAESLAAENSSLTDSYNKQRSIVNQLKSDMEMLQEEMKTQMVELESIKLEYANAQLECNAADERAKLIASEVIGLEEKGGRFRLSSVVLTFDLDDYRGALDKPNLEPFQPDTSSDDSNGNFKDHALRLRSNELKLERQLENLEAEIFSYKKKMSSMEKERQDFQSTIDALQEGMVDCREDSNPRILKYIIQKKLLQSKLRKASANGKSIDISNPSNRKDMATSTEDLVNTDTSPSTFNHEVKDGESLTEDDTSGAPMLLENATTEVSSVIIPPDHMRMIQNINALIAELAVEKEELTQALASELASSSRLKELNKELSRKLEAQTQRLELLTAQSMAGEIVPVRLPDSRTAHDEDIVLADEGDEAYKHFSFLGGGKSLGMDYEALSRWPVAPKDQQASLRCGVV 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19031445 19044185 - Lsi09G011780.1 Lsi09g01178 670791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01178 915 Coils Coil 527 575 - -
Lsi09g01178 915 MobiDBLite consensus disorder prediction 17 40 - -
Lsi09g01178 915 MobiDBLite consensus disorder prediction 70 86 - -
Lsi09g01178 915 Coils Coil 818 845 - -
Lsi09g01178 915 MobiDBLite consensus disorder prediction 55 69 - -
Lsi09g01178 915 Coils Coil 790 810 - -
Lsi09g01178 915 Coils Coil 478 505 - -
Lsi09g01178 915 MobiDBLite consensus disorder prediction 717 752 - -
Lsi09g01178 915 MobiDBLite consensus disorder prediction 1 145 - -
Lsi09g01178 915 Coils Coil 636 684 - -
Lsi09g01178 915 MobiDBLite consensus disorder prediction 717 762 - -
Lsi09g01178 915 PANTHER PROTEIN BLISTER 634 875 IPR044194 GO:0040008
Lsi09g01178 915 PANTHER PROTEIN BLISTER 1 592 IPR044194 GO:0040008
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01178 - - - bhj:120092754 1318.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g814 . . . . Bpe04g01051 . Bma04g01032 . Cmo08g01019 Cmo17g00127 . . . . . . . . . . . . . . . . . . . . . Cone14ag0199 Cone15ag0212 . . . Csa02g01012 Chy05g00276 . . . . . . . . . Sed09g0207 . . Cma08g01048 Cma17g00125 Car08g00923 Car17g00111 Cpe12g00109 . Bhi12g01537 Tan06g2351 Cmetu05g1285 . . . Lcy13g0426 . . . . . . . Lsi09g01178 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004173 0 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 3 1 1 5 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01178 Lsi_Chr09 FPKM 0.207729 0.0 19.316952 19.880043 54.785728 43.40173 53.906685 0.0 0.0 0.0