Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01183 ATGGCCGCAGAACCAATGCAGTCTACCTCTTCTCAAAAGAGAAGGCTAAAGAGGAAGAAAACCCAGAAAGACCCAGAATTGGAACGTCTCGACTCACTCCCCTGGAACTCATCAATCCCTAGCGAGGACCCTTTATCTTCATTCATTGGTTCCAATGATCTCGAAGGAGGTTTTCTTTCGCTTGAGGAGATTGATGAAGCTGTGTATGGCTTGGCGATTCCCGAACCTGATACAATGAAACACAAGTTGACACCAAAGGCCACTGGAAATTCAGGGAAAAAGGAGAAGAAGAAAAAGAAGAAAAAGAAGAAGGTCATTCATGAAGTCCTAACGGCTGAGGAAGTTGTGGCTGAAGATATAGGTGGCAGTGATAATGATGGGATTGAGACAGAGATTGGAGATGAAATGGACAATGGCGATCCTTTGGAGACGGAGAAGAAGCGACAAAAGAAAGAAAAAGAAACAAAGAACCATGGAATTGATAAAGAAACGGGGGGTGAAGTTGAAAAGGATGCAGTTGATGAAACTGAATATTATGCATGGAATGAGTTGAGACTCCATCCTTTGCTTATGAAATCGATCTACAAACTTGGGTTTAAGGAACCTACAGCGATCCAGAAAGCTTGTATTCCAGCTGCTGCTTACCAAGGGAAGGATGTTGTTGGTGCCGCTGAGACAGGATCTGGAAAAACACTAGCTTTTGGATTGCCTATCCTACAACGTTTCTTGGATGAACGAGAGAAATCTGGAAAGATTTCTGAAGAAAAAGGAGTAGGTGCAAAAAAATATGCTCCCAGAAGTCTTCTACGGGCTCTAATTATTACTCCTACTAGAGAACTTGCTCTTCAGGTTACCGATCATCTCAAGGCAGTCGCAGTAGGTACAGATATCAGGGTGGTTCCAATTGTTGGTGGGATGTCCACTGAAAAGCAGGAAAGGCTTTTAAGGATGAGGCCAGAGGTTGTAGTTGGAACTCCAGGGCGGTTGTGGGAACTTATGTCAGGAGGAGAAAAGCATCTTGTTGAGTTGCAGACATTGTCTTTCTTTGTGCTGGATGAGGCTGATAGGATGATAGAAAATGGACACTTCCGTGAGTTGCAATCCATTATTGATATGCTTCCTGTGACCAATGGTTCTGCAGAAAATTTACAAATTGCGGAAAACTCTTTGACCACTCCAAGTTCTCAAAGAAAGAAAAGGCAAACACTTGTGTTTTCTGCTACATTGTCACTATCTTCTGATTTCCGTAAGAAACTAAAGCGTGGATCATCGAAACCTAATCAATCGGGGATGGATGGTTTGAATTCTATAGAGGCTCTATCTGAGAGAGCTGGGATAAGACCTAATGTTGCTATTATAAATCTGACCAACACATCGGTTTTGGCAAATAATCTTGAAGAATCATTTATAGAATGCAGGGAAGAAGACAAAGATGCTTATTTGTATTACATTCTGTCTGTTTATGGACAAGGCCGCACTATTGTGTTCTGTACATCCATTGCTGCACTACGGCATATTGCTGCTTTATTATCCATTGTTGGCGTTAATGTCTTCACTCTTCATGCTCAAAGGCAGCAACGAGCACGCTTGAAGGCAATTGATCGTTTCCGTGGAAGTCAAAATGGGATACTGATTGCCACTGATGTTGCGGCCAGAGGCCTCGATATTCCTGGTGTTCGAACTGTTGTCCACTATCAACTACCACATTCAGCCGAGGTTTATGTTCATAGAAGTGGTAGAACAGCCAGAGCTTCTGCTGATGGATGCAGTATCGCGTTAGTCTCAGCCAATGAGACTTCCAAATTTGCATCTCTATGCAAATCATTCTCTAAGGAAAGCTTCCAGCGATTTCCTGTTGATAATTCATACATGCCAGAGGTTCTAAAACGCTTGTCTCTTGCACGCCAGATCGACAAGATTCTGCGGAAAGATTCCCAGGAGAAGGCAAGTAAAACCTGGTTTGAGCGTAATGCAGAGTTAGTGGAATTAGTTGTGGACAATGATGACAGTGAAGAGGAGAGGGTAAACAATTATAAGCAGAAGAAAGTTGGCTCCATTCAATTGAAGAAATTGCAGCAGGAGCTCGACAAGCTGCTTTCCCACCCTCTGCAACCAAAATCATTTTCACACCGATATTTGGCTGGTGCTGGGGTTTCACCTCTTCTACAACATCAATTTGAAGAACTGGCCAAGCAGAACACATCTATTCGGAATATGGGAGATAACAAAAGGAGGAAGTTGGCTGCTTTTGGTCAAGATCTTACCGAACCACTTCAAGCACTTCGAACTGGTGGTCAACAGGTACATATGGATGCAAAAGAGATGGCTGAAAAACGGAGGAAAATGGAGAACCTTAGGAGAAAGAAAAAAGAGGAGAAAAAACGCTTGCGTGACCAGCGGAGAAATAAACGAAAACAAATGAAAGGCAAGATTTAG 2436 42.86 MAAEPMQSTSSQKRRLKRKKTQKDPELERLDSLPWNSSIPSEDPLSSFIGSNDLEGGFLSLEEIDEAVYGLAIPEPDTMKHKLTPKATGNSGKKEKKKKKKKKKVIHEVLTAEEVVAEDIGGSDNDGIETEIGDEMDNGDPLETEKKRQKKEKETKNHGIDKETGGEVEKDAVDETEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLAFGLPILQRFLDEREKSGKISEEKGVGAKKYAPRSLLRALIITPTRELALQVTDHLKAVAVGTDIRVVPIVGGMSTEKQERLLRMRPEVVVGTPGRLWELMSGGEKHLVELQTLSFFVLDEADRMIENGHFRELQSIIDMLPVTNGSAENLQIAENSLTTPSSQRKKRQTLVFSATLSLSSDFRKKLKRGSSKPNQSGMDGLNSIEALSERAGIRPNVAIINLTNTSVLANNLEESFIECREEDKDAYLYYILSVYGQGRTIVFCTSIAALRHIAALLSIVGVNVFTLHAQRQQRARLKAIDRFRGSQNGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALVSANETSKFASLCKSFSKESFQRFPVDNSYMPEVLKRLSLARQIDKILRKDSQEKASKTWFERNAELVELVVDNDDSEEERVNNYKQKKVGSIQLKKLQQELDKLLSHPLQPKSFSHRYLAGAGVSPLLQHQFEELAKQNTSIRNMGDNKRRKLAAFGQDLTEPLQALRTGGQQVHMDAKEMAEKRRKMENLRRKKKEEKKRLRDQRRNKRKQMKGKI 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19105902 19118539 + Lsi09G011830.1 Lsi09g01183 670796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01183 811 MobiDBLite consensus disorder prediction 120 163 - -
Lsi09g01183 811 CDD DEADc_DDX24 190 453 - -
Lsi09g01183 811 PANTHER RNA HELICASE 81 733 - -
Lsi09g01183 811 SMART helicmild6 504 585 IPR001650 -
Lsi09g01183 811 SMART ultradead3 198 440 IPR014001 -
Lsi09g01183 811 MobiDBLite consensus disorder prediction 1 48 - -
Lsi09g01183 811 MobiDBLite consensus disorder prediction 124 138 - -
Lsi09g01183 811 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 81 733 - -
Lsi09g01183 811 MobiDBLite consensus disorder prediction 766 811 - -
Lsi09g01183 811 Gene3D - 141 428 IPR027417 -
Lsi09g01183 811 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 464 632 IPR001650 -
Lsi09g01183 811 Coils Coil 768 806 - -
Lsi09g01183 811 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 350 358 IPR000629 -
Lsi09g01183 811 CDD SF2_C_DEAD 465 594 - -
Lsi09g01183 811 Pfam DEAD/DEAH box helicase 203 410 IPR011545 GO:0003676|GO:0005524
Lsi09g01183 811 MobiDBLite consensus disorder prediction 139 163 - -
Lsi09g01183 811 MobiDBLite consensus disorder prediction 76 103 - -
Lsi09g01183 811 MobiDBLite consensus disorder prediction 782 811 - -
Lsi09g01183 811 Pfam Helicase conserved C-terminal domain 476 584 IPR001650 -
Lsi09g01183 811 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 211 427 IPR014001 -
Lsi09g01183 811 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 179 207 IPR014014 GO:0003724
Lsi09g01183 811 MobiDBLite consensus disorder prediction 34 48 - -
Lsi09g01183 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 600 IPR027417 -
Lsi09g01183 811 Gene3D - 454 699 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01183 K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5 [EC:3.6.4.13] - csv:101209958 1386.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01183 Lsi-Chr9:19105902 Lsi09g00051 Lsi-Chr9:428363 1.03E-60 dispersed
Lsi09g01183 Lsi-Chr9:19105902 Lsi02g01929 Lsi-Chr2:25221691 1.74E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01183 Lsi_Chr09 FPKM 11.333333 6.868211 7.050863 7.855263 3.94538 4.109309 3.373413 13.852997 21.88625 20.050119