Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01190 ATGGAGGTTCAGCAGTCATGGAGATTGAGATTCTCGTTTAGGAATGCGACCATTGCTTTGTGCTTGTTGAATTTAGTGGCAGCTTTTCTTCTGCTTCAGGGTTTTTTATCTGCTGCTTCTTCCCGCAACAGACCCTCATCAACAAATCCCAATTTGGATCAACTCAAATATATCAGGGAATCTGAAGAGATTCGACTTTCCATGCAACCTTTGGAACTGATTAAAAGGGTAAGGGAAATTCAGCAGGAAGCATATTATGAAACACAAGTTGTACAAGAAAAAGACTCCAAGCAGAATGCTGCCATTGATCTTTCTAAAAGATTGAAAGACTTCCGTTCTCTAAATGATGCTTCCAGCTTAAAAGCTCTTGAGGAATGGCGCAAAAGGAAGATGGAAAGAGCAAGACTGCGTGAAATGGAGAAAAATGGGACACTGAGTTCTCCTTCTCAGCCTCGGAAACACAACTTCTAA 471 41.19 MEVQQSWRLRFSFRNATIALCLLNLVAAFLLLQGFLSAASSRNRPSSTNPNLDQLKYIRESEEIRLSMQPLELIKRVREIQQEAYYETQVVQEKDSKQNAAIDLSKRLKDFRSLNDASSLKALEEWRKRKMERARLREMEKNGTLSSPSQPRKHNF 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19146833 19150990 - Lsi09G011900.1 Lsi09g01190 670803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01190 156 PANTHER OS02G0761600 PROTEIN 6 147 - -
Lsi09g01190 156 PANTHER TRANSMEMBRANE PROTEIN 6 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01190 - - - csv:101209470 261.151
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g799 . . . Bda08g00007 . . . Bma05g01258 Cmo08g01026 . . . . . . . . . . . . . . . Cla06g00703 Cam06g0754 Cec06g0760 Cco06g0772 Clacu06g0745 Cmu06g0728 Cre06g1505 . . . . . Csa02g01020 Chy05g00284 . . . . . Bpe05g01112 . . . . . . Cma08g01055 . . . . Cpe17g00222 . . . . . . . . . . . . . . Lsi09g01190 . . Cme05g00625
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011927 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01190 Lsi_Chr09 FPKM 35.709549 40.345909 19.024199 18.824837 24.909609 27.089964 23.890291 9.303216 9.838696 9.460201