Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01193 ATGTCTATTTTGAACCCATTTCAGCTTTTAGAGCTTAATGTAATCTCTGCTCAGGATTTAGCTCCGGTGTCTCGTTCTATGAGAACTTACGCCGTGGCTTGGGTTCATCCTGACCGCAAACTATCCACCCGCGTCGATACTCATGGCCATAACAACCCAACATGGAATGACAAGTTTGTGTTTCGTGTTGATGATGAGTTCTTACATTCCGACACGTCGGCGGTGATGATCGAGATCTATGCTCTGCATTGGTTTAAAGACATTCATGTTGGGACGGTGAGGATTCTTGTTGGGAATCTCATTCCTACTCCGCCGCGGCTTCATCAGTTTAGCCAACAGCCACAAGTCGGAATGCGATTTGTGGCTTTACAGGTACGGCGGCCATCGGGTAGGCCGCAGGGGATTTTGAATATTGGGGTTGCTCTGCTTCATAGCTCGATGAGGAGTATGCCGTTGTACTCGCAGTTGAGTACCTCAGCGATTGGGTACCGGAATCTCATGGGGGAGGAGGACCCATTTCATAATCATCATAGTAATAACAATAATCATAGCCATGGAACTCCCACGGTGGTTACTCGGCCGGAGATGCGGCGGTCCAAGAGCGATACGAGTTCGATGATGGGATCAGAGCTTCGAGGGTCGGAAATGATGGGAAAAGGGACGAAATCGAAAGCGAGTTCTATGGTGAATGGGTCAGAGGTTTCAAAGCAGAAGAAAAAGGGAAGATCCAAAGCCAGTTCGATGGTTAGTGGGTCGGTTGTGATTAAAAGAAAAGGAAAATCCAGGAAGGCGAGTTCGATGATTAGTGGGTCGGGGATTGAAGTAGCTTATAGTAACAAAAATGGGAAGAATGGGAAATCAAACCCTGTAATTGCAGGGAAGAAGGATAAAATTGATCAATCCAGCATTTTAAGCGGCTCTGAAGTTTACCCAATTCAGCCACCGCCAGTCAAGAAGGAAAAACCACTAAAACAACCCAATTCTAGCGAGGAATCCTTCGATTCTCCTCCATGGAAAAAGCCTCCCCATGATAAACCCATTTCGAAACCGGAGTTTGCCGATTCGCCGAGAGAGAAACCGGGTCCAGAAACACCCAATTCGAGGTTTGACAAAATGCCTTACGCTACGCCACTCAGAACTCCACAGAGGTTAGCCGGCGGCGGCGGTACTGCTAGAGCAACTCCGATGCACGAGAAATTTGCGACACCGAGAAGATCCACGCCGTTGCAGGGAAAATCATCTTACACGAAACACAACGATTTCAGTTATACAACACCGAGGAAATCGTTTTTGGGTGGCGCATTTTTGACCGAATCGGAGCTCGGTCCGTCGCCGTCGGAGGTAGCGGCACAAATGGCGACACAGAAAATCGATGACGGCAACGAGAGCTCGATTGTTGGTGGGTTGAGCCTGAACGACAGCGTCGAGGGTCTACAGTCGAAGCTGGAGCGGTGGCGGACGGAGCTTCCGCCGGTTTATGATCGCGGCGAGTTATCTAGCTTTCCATCTAGCGAAACCCCACAACACAACCGCCGTCACAGTGACGGCGGCGGCCTATTTTCCTGTTTCAGCAACATTTGCGGCTGCGAATGCTCCATCGTCTGCGGCGGATCGCCGAAGGCACCGAAGAAATCCGCCAGCGGCCGTGTTGTTCGGAGCCCGTCGGCCGACCATGTGAGCTTCGTGTAA 1689 50.33 MSILNPFQLLELNVISAQDLAPVSRSMRTYAVAWVHPDRKLSTRVDTHGHNNPTWNDKFVFRVDDEFLHSDTSAVMIEIYALHWFKDIHVGTVRILVGNLIPTPPRLHQFSQQPQVGMRFVALQVRRPSGRPQGILNIGVALLHSSMRSMPLYSQLSTSAIGYRNLMGEEDPFHNHHSNNNNHSHGTPTVVTRPEMRRSKSDTSSMMGSELRGSEMMGKGTKSKASSMVNGSEVSKQKKKGRSKASSMVSGSVVIKRKGKSRKASSMISGSGIEVAYSNKNGKNGKSNPVIAGKKDKIDQSSILSGSEVYPIQPPPVKKEKPLKQPNSSEESFDSPPWKKPPHDKPISKPEFADSPREKPGPETPNSRFDKMPYATPLRTPQRLAGGGGTARATPMHEKFATPRRSTPLQGKSSYTKHNDFSYTTPRKSFLGGAFLTESELGPSPSEVAAQMATQKIDDGNESSIVGGLSLNDSVEGLQSKLERWRTELPPVYDRGELSSFPSSETPQHNRRHSDGGGLFSCFSNICGCECSIVCGGSPKAPKKSASGRVVRSPSADHVSFV 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19185727 19187415 - Lsi09G011930.1 Lsi09g01193 670806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01193 562 MobiDBLite consensus disorder prediction 171 423 - -
Lsi09g01193 562 SMART C2_3c 9 109 IPR000008 -
Lsi09g01193 562 MobiDBLite consensus disorder prediction 264 286 - -
Lsi09g01193 562 MobiDBLite consensus disorder prediction 220 234 - -
Lsi09g01193 562 MobiDBLite consensus disorder prediction 336 365 - -
Lsi09g01193 562 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 156 IPR035892 -
Lsi09g01193 562 Gene3D C2 domain 7 153 IPR035892 -
Lsi09g01193 562 CDD C2_SRC2_like 10 138 IPR044750 GO:0006952
Lsi09g01193 562 PANTHER INGRESSION PROTEIN FIC1 1 535 - -
Lsi09g01193 562 MobiDBLite consensus disorder prediction 539 562 - -
Lsi09g01193 562 MobiDBLite consensus disorder prediction 406 423 - -
Lsi09g01193 562 MobiDBLite consensus disorder prediction 494 514 - -
Lsi09g01193 562 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 535 - -
Lsi09g01193 562 Pfam C2 domain 9 105 IPR000008 -
Lsi09g01193 562 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01193 - - - csv:101215059 1001.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02102 Lsi-Chr5:27863315 Lsi09g01193 Lsi-Chr9:19185727 5.79E-46 dispersed
Lsi09g01193 Lsi-Chr9:19185727 Lsi11g00897 Lsi-Chr11:11920433 2.64E-20 dispersed
Lsi09g01193 Lsi-Chr9:19185727 Lsi05g01532 Lsi-Chr5:23112870 7.87E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g787 . . Bda03g01098 Bda08g00001 Bpe04g00982 Bpe14g01285 Bma04g01023 . Cmo08g01028 Cmo17g00136 . . . . . . . . . . . . . . Cla06g00700 Cam06g0751 Cec06g0757 Cco06g0769 Clacu06g0742 Cmu06g0725 Cre06g1501 . . . . . Csa02g01025 Chy05g00289 . Blo02g00684 . . Bda13g00035 Bpe05g01111 . Bma02g00748 . Sed09g0214 . . Cma08g01057 Cma17g00133 Car08g00933 Car17g00119 . . Bhi12g01558 Tan06g2367 Cmetu05g1475 . . . Lcy13g0413 . . . . . . . Lsi09g01193 . . Cme05g00621
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005929 3 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 0 1 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01193 Lsi_Chr09 FPKM 50.125351 49.391029 18.905983 19.399267 14.446779 17.122721 14.7097 15.491173 13.576611 13.075809