Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01195 ATGGGTTTTCACTCCAAACCCTTCTCCTTCTTCTTCTTCTTCTTCTCCTTCCTTCTGTTTATTAGTTATCTCGCTTGTTTGGTTGAATCTGGTTCTGATTACACCACATTGGTCTACAAAGGTTGCGCCAAACAAGGATTCTCAGATCCAAATGGCGTTTACTCACAAGCCCTGGCTGCCTTGTTTGGCTCTTTAGTTTCACAATCCGCCAAAGGCTCAAAGTTCTTCAAAACTACCTCCGGCACCACCCAAACCGCCATCACCGGCCTCTTCCAATGCCGAGGGGATCTCAGCAACTCCGATTGCTATAACTGTGTAAGTAAGCTGCCGGAATTGGCCGATAGTCTGTGTGGCAGAACTATTGCCGCTAGAGTTCAGCTCTCAGGCTGCTATTTGCTGTATGAGTTTCCTGGGTTTGTTCAGATTTCAGGGTTTGAAATGCTGTATAAAACTTGTGGGGCTACGAACATTGCTGGAAGTGGGTTTGAGGAGAGGAGAGACACGGGTTTGTCTGTGTTGGAGAATGGAGTGGTGAGTGGCCATGGATTTTACACTACTAACTATCAATCTCTGTATGTGTTGGCTCAATGTGAGGGAGATTTAGGGGATTCAGATTGTGGTGAGTGTGTGAAGCATGCTGTGCAGAAAGCTCAGGTTGAATGTGGAAGCTCAATTTCAGGGCAAGTTTATTTGCATAAGTGCTTTATCAGCTACAGTTATTACCCAAATGGGGTTCCAAAGAGATCGTCTTCTCCTTCATCTTCTTCATCTTCTTCTTCATCATCATCATACTCTTCATCACCATCAGGGATGGGGCAAAACACAGGGAAGACAGTGGCTGTGATATTAGGAGGTGCAGCAGGAGTGGGATTTCTGGTCATTTGCTTGCTTTTCATTAGAAATTTGAAGAAGAAACATGATGGTATGCTTGATTCAACTTTCTACCATTTTTGTTACCAAAACTTACATTCATTAATTGAGTTCATCTTCTACCTGCAGATTATTGATACAGGGGAAAGAGTGAATGTTGTTCTATTGAGGTAA 1044 43.58 MGFHSKPFSFFFFFFSFLLFISYLACLVESGSDYTTLVYKGCAKQGFSDPNGVYSQALAALFGSLVSQSAKGSKFFKTTSGTTQTAITGLFQCRGDLSNSDCYNCVSKLPELADSLCGRTIAARVQLSGCYLLYEFPGFVQISGFEMLYKTCGATNIAGSGFEERRDTGLSVLENGVVSGHGFYTTNYQSLYVLAQCEGDLGDSDCGECVKHAVQKAQVECGSSISGQVYLHKCFISYSYYPNGVPKRSSSPSSSSSSSSSSSYSSSPSGMGQNTGKTVAVILGGAAGVGFLVICLLFIRNLKKKHDGMLDSTFYHFCYQNLHSLIEFIFYLQIIDTGERVNVVLLR 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19196585 19198527 - Lsi09G011950.1 Lsi09g01195 670808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01195 347 MobiDBLite consensus disorder prediction 249 271 - -
Lsi09g01195 347 ProSiteProfiles Gnk2-homologous domain profile. 144 243 IPR002902 -
Lsi09g01195 347 PANTHER PLASMODESMATA-LOCATED PROTEIN 2 11 307 - -
Lsi09g01195 347 Pfam Salt stress response/antifungal 156 240 IPR002902 -
Lsi09g01195 347 Pfam Salt stress response/antifungal 46 135 IPR002902 -
Lsi09g01195 347 Gene3D - 34 139 IPR038408 -
Lsi09g01195 347 Gene3D - 145 242 IPR038408 -
Lsi09g01195 347 ProSiteProfiles Gnk2-homologous domain profile. 35 139 IPR002902 -
Lsi09g01195 347 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 11 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01195 - - - csv:101214821 544.273
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01768 Lsi09g01195 CCT
Lsi05g01768 Lsi09g01195 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01195 Lsi-Chr9:19196585 Lsi11g00895 Lsi-Chr11:11909400 4.83E-38 dispersed
Lsi09g00940 Lsi-Chr9:11932166 Lsi09g01195 Lsi-Chr9:19196585 1.18E-27 transposed
Lsi05g01768 Lsi-Chr5:25035007 Lsi09g01195 Lsi-Chr9:19196585 1.60E-149 wgd
Lsi05g01051 Lsi-Chr5:18024906 Lsi09g01195 Lsi-Chr9:19196585 4.92E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g780 . . . . . Bpe14g01278 . . Cmo08g01029 Cmo17g00138 Cma06g01296 Cma14g01843 Car06g01112 Car14g01651 Sed02g1437 Cpe08g00357 Cpe03g01543 Bhi01g00678 Tan10g0631 Cmetu06g1629 . Hepe05g1691 . Lcy11g1704 Cla06g00698 Cam06g0749 Cec06g0755 Cco06g0767 Clacu06g0740 Cmu06g0723 Cre06g1499 Cone14ag0180 Cone15ag0190 Cone7ag0347 Cone4ag0361 Lsi05g01768 Csa02g01027 Chy05g00291 Cme06g00453 Blo02g00771 Blo07g00287 Bda11g00648 Bda13g00040 . . Bma02g00752 . Sed04g2018 Cmo06g01304 Cmo14g01886 Cma08g01059 Cma17g00138 Car08g00935 Car17g00121 . Cpe17g00217 Bhi12g01560 Tan06g2369 Cmetu05g0653 Lac12g2119 Hepe03g0314 . Lcy13g0410 Cla05g00411 Cam05g0449 Cec05g0456 Cco05g0457 Clacu05g0446 Cmu05g0423 Cre05g0486 Lsi09g01195 Csa03g01172 Chy06g00434 Cme05g00619
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001670 2 2 1 1 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 5 2 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01195 Lsi_Chr09 FPKM 10.315789 10.638487 15.131106 13.6324 13.395544 15.719756 13.240568 11.976634 10.110769 8.508564