Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01197 ATGTTGCAAGACGTCGTCCACTCCGCGTCGGAGCAAATGCTTTTCATTGATGAAATCTCGAGTCCGATCAATGCGCAAATCTTTGATTTCTGTGATCCCGAGCTGTTCGCGGAGACGCTTCAGAATTCCGAGTTCAATTCTTGCTCGAATTGTTGTTATGACAACAATTCGCCATATGCTACAAATCTGTCTAATTCCCCGGATCAAACAGATAACAATGGCAATGGGAATGGCCATACCGTCGCTGCTGCTGCATCGTTTATACCTGCTAACGACGCATCCGCTGCAACTAACTTAACGACCAACAGTACTAGTAATCTGACTGCTATCTTTGATTCCCAAGAAGAACTTGACAATGATATCTCTGCTTCCATAGACTTCTCTCCATCGGCTTCGTTTTCGATCCCTCAATATCTCACCATCCAGTCAGGGCAGTTCGACGTTTCTCAAGTGCAGTCTCAAATGCCATTAGTAGATCCCATGATTGAGGGGCTTGTCCAGTGTCCTATGGCTCCAGTTGGAACTCTCATCGACGAAGAACTACCATCAATTTACGTCGACGATTGCTTGTCTTCCTTGACTTCCTACATGCCACTCAACCCTTCTTCCCCCTCGTGCTCGTTTGTCGGAGCAACCATGGCAAGTTACCTGCCTACTACATCAATGAATCCTGCTACATCGACTGTCGAAAGTTGCGGAATGTTTTCTCTCCTTGGCGCAGAATTGCAACCGCAAGACCTTGACTATCAAGGAGACAACTGTGGACTCTACAGCCAAGACTGTATGCAGGGGACTTTCAATCCAGCAGACCTTCAGGTGCTTAACAATGATAATCTACAACTGGCTGCTGGGGCAATGAACTGCACTTCTTTAGCATCAGATCTCTCAAGCTTAAAGGACAGTACTTTCAAAGTAGGAAAACTCTCCATGGAAGAGAGAAAGGAGAAGATTCATAGGTACATGAAGAAAAGAAATGAGAGAAACTTCAGCAAGAAAATCAAGTATGCTTGCCGAAAAACGCTAGCGGATAGCCGGCCACGTGTTCGGGGACGGTTCGCAAAGAACGACGAATTAGCAGAGAATCACAGAGCTGCTTGTAGCAACCATGAAGGAGAAGAAGAAGAAGAAGTAGTTGTGAAGAAAGAAGATAGCATGGTTGATTCCTCAGATATCTTTGCGCATATCAGTGGAGTGAACTCTTTCAAGTGCAACTATCCAATCCAGTCTTGGATTTGA 1236 45.39 MLQDVVHSASEQMLFIDEISSPINAQIFDFCDPELFAETLQNSEFNSCSNCCYDNNSPYATNLSNSPDQTDNNGNGNGHTVAAAASFIPANDASAATNLTTNSTSNLTAIFDSQEELDNDISASIDFSPSASFSIPQYLTIQSGQFDVSQVQSQMPLVDPMIEGLVQCPMAPVGTLIDEELPSIYVDDCLSSLTSYMPLNPSSPSCSFVGATMASYLPTTSMNPATSTVESCGMFSLLGAELQPQDLDYQGDNCGLYSQDCMQGTFNPADLQVLNNDNLQLAAGAMNCTSLASDLSSLKDSTFKVGKLSMEERKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDELAENHRAACSNHEGEEEEEVVVKKEDSMVDSSDIFAHISGVNSFKCNYPIQSWI 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19217158 19220175 + Lsi09G011970.1 Lsi09g01197 670810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01197 411 ProSiteProfiles CCT domain profile. 313 355 IPR010402 GO:0005515
Lsi09g01197 411 PANTHER CCT MOTIF FAMILY PROTEIN 16 411 - -
Lsi09g01197 411 Pfam CCT motif 313 355 IPR010402 GO:0005515
Lsi09g01197 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 16 411 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01197 - - - csv:101214336 713.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01381 Lsi-Chr2:18851696 Lsi09g01197 Lsi-Chr9:19217158 1.83E-07 dispersed
Lsi09g00236 Lsi-Chr9:2482220 Lsi09g01197 Lsi-Chr9:19217158 3.18E-25 dispersed
Lsi09g01197 Lsi-Chr9:19217158 Lsi11g01617 Lsi-Chr11:24510637 5.77E-22 dispersed
Lsi10g01331 Lsi-Chr10:17522411 Lsi09g01197 Lsi-Chr9:19217158 1.84E-06 dispersed
Lsi09g01197 Lsi-Chr9:19217158 Lsi09g00025 Lsi-Chr9:238636 3.41E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g777 . . . . . . Bma04g01020 Bma05g01253 Cmo08g01031 Cmo17g00141 . . . . . . . . . . . . . . Cla06g00696 Cam06g0746 Cec06g0753 Cco06g0764 Clacu06g0737 Cmu06g0721 Cre06g1497 Cone14ag0177 Cone15ag0187 . . . Csa02g01029 Chy05g00292 . . . . . Bpe05g01109 . . . . . . Cma08g01061 Cma17g00142 Car08g00937 Car17g00124 Cpe12g00121 Cpe17g00215 Bhi12g01564 . . Lac12g2122 . . . . . . . . . . Lsi09g01197 . . Cme05g00617
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006098 0 4 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25930 PF06203 CCT 5.40E-19 CL0281 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g01197 Lsi_Chr09 FPKM 14.643939 15.658894 32.693802 29.564234 2.84959 5.934377 4.996262 1.588317 2.031076 1.656879