Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01200 ATGGCCGGTGAGGTAGCGGTGGAGGGTGCTGCGGCGGCAGCGGCGGCGGCGATAGAAGTAGCCGATTCCAATCAGCAGTACCATAAATTGGAGAGAAAATGGACCTTTTGGTTTGATAACCAGTCCAGGCCGAAGCAAGGTGCTGCTTGGGGCACTTCTCTACGCAAGGTCTATACCTTTGACACCGTCGAAGAATTTTGGTGTTTGTACGATCAGTTATTCAAGCCGAGTAAGTTGCCGGCTAATGCAGATTTTCACCTGTTCAAATCTGGAGTTGAACCGAAATGGGAAGATCCTGAGTGCGCTAATGGAGGAAAATGGACTGTCACGAGCAGTAGAAAGGCTAACCTCGATAACATGTGGCTGGAAACGTTGATGGCTTTGATTGGGGAGCAATTTGAGGAGTCTGATGAGATCTGTGGCGTAGTTGCCAGTGTGCGCCAGAGGCAGGACAAACTTGCCCTCTGGACCAAGACAGCAACAAATGAGGCTGCTCAGATGAGCATTGGTAGGAAATGGAAGGAAATTATCGACGTGACCGACAAGATTTCCTTCAGCTTTCATGAGGATTTGAGAAGGGAAAAGTCAGCAAAAGCTCGATACAGTGTTTGA 612 49.02 MAGEVAVEGAAAAAAAAIEVADSNQQYHKLERKWTFWFDNQSRPKQGAAWGTSLRKVYTFDTVEEFWCLYDQLFKPSKLPANADFHLFKSGVEPKWEDPECANGGKWTVTSSRKANLDNMWLETLMALIGEQFEESDEICGVVASVRQRQDKLALWTKTATNEAAQMSIGRKWKEIIDVTDKISFSFHEDLRREKSAKARYSV 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19231830 19234877 + Lsi09G012000.1 Lsi09g01200 670813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01200 203 Coils Coil 13 33 - -
Lsi09g01200 203 PANTHER BNAA08G29940D PROTEIN 1 195 - -
Lsi09g01200 203 Pfam Eukaryotic initiation factor 4E 29 185 IPR001040 GO:0003723|GO:0003743|GO:0006413
Lsi09g01200 203 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 1 195 IPR001040 GO:0003723|GO:0003743|GO:0006413
Lsi09g01200 203 Gene3D RNA Cap, Translation Initiation Factor Eif4e 19 203 IPR023398 -
Lsi09g01200 203 ProSitePatterns Eukaryotic initiation factor 4E signature. 84 107 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Lsi09g01200 203 SUPERFAMILY eIF4e-like 23 196 IPR023398 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00851 Lsi-Chr2:7981656 Lsi09g01200 Lsi-Chr9:19231830 2.28E-67 dispersed
Lsi03g01306 Lsi-Chr3:23884420 Lsi09g01200 Lsi-Chr9:19231830 1.86E-30 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01200 K03259 - csv:101208495 385.571